Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| STAD | TCGA-VQ-AA6D-01A | TCGA-VQ-AA6D | EPHA2|FBXO42 | EPHA2 | FBXO42 | 1 | 1 | -1 | -1 | 6 | 112 | 105 | 0.88 | 16474873 | 16583254 | tier1 | In-frame | 5667 | NA | 0.38447 |
| STAD | TCGA-CG-4476-01A | TCGA-CG-4476 | ERC1|GABRB1 | ERC1 | GABRB1 | 12 | 4 | 1 | 1 | 3 | 1 | 1 | 0.017 | 1299218 | 47322144 | tier4 | In-frame | 5744 | NA | 0.36558 |
| STAD | TCGA-D7-8575-01A | TCGA-D7-8575 | ETNK1|ITPR2 | ETNK1 | ITPR2 | 12 | 12 | 1 | -1 | 7 | 59 | 56 | 0.24 | 22826594 | 26634174 | tier1 | In-frame | 5852 | NA | 0.36324 |
| STAD | TCGA-BR-4357-01A | TCGA-BR-4357 | ETV5|DGKG | ETV5 | DGKG | 3 | 3 | -1 | -1 | 4 | 3 | 3 | 0.24 | 185797606 | 185929674 | tier1 | In-frame | 5862 | NA | 0.359 |
| STAD | TCGA-BR-7959-01A | TCGA-BR-7959 | FAM134B|SLC6A19 | FAM134B | SLC6A19 | 5 | 5 | -1 | 1 | 2 | 6 | 5 | 2.1 | 16481118 | 1208861 | tier2 | In-frame | 6046 | NA | 0.33992 |
| STAD | TCGA-BR-4366-01A | TCGA-BR-4366 | FAM59A|DSG4 | FAM59A | DSG4 | 18 | 18 | -1 | 1 | 6 | 9 | 9 | 0.91 | 29972858 | 28970619 | tier1 | In-frame | 6190 | NA | 0.35067 |
| STAD | TCGA-BR-8680-01A | TCGA-BR-8680 | FAT1|STAT6 | FAT1 | STAT6 | 4 | 12 | -1 | -1 | 2 | 9 | 5 | 2.1 | 187508949 | 57496773 | tier4 | NA | 6272 | NA | 0.37862 |
| STAD | TCGA-RD-A8N6-01A | TCGA-RD-A8N6 | FGD4|CACNA1C | FGD4 | CACNA1C | 12 | 12 | 1 | 1 | 4 | 6 | 6 | 1.1 | 32552893 | 2558142 | tier4 | Out-of-frame | 6431 | NA | 0.37551 |
| STAD | TCGA-BR-8080-01A | TCGA-BR-8080 | FGFR2|TACC2 | FGFR2 | TACC2 | 10 | 10 | -1 | 1 | 8 | 87 | 75 | 0.13 | 123243212 | 123996910 | tier1 | In-frame | 6471 | NA | 0.38368 |
| STAD | TCGA-BR-A44T-01A | TCGA-BR-A44T | FLNA|EIF2AK2 | FLNA | EIF2AK2 | X | 2 | -1 | -1 | 2 | 3 | 1 | 0.25 | 153576900 | 37342384 | tier3 | NA | 6561 | NA | 0.38918 |
| STAD | TCGA-VQ-A92D-01A | TCGA-VQ-A92D | FRMD8|MARK2 | FRMD8 | MARK2 | 11 | 11 | 1 | 1 | 2 | 47 | 38 | 0.63 | 65154592 | 63662631 | tier2 | Out-of-frame | 6735 | NA | 0.38458 |
| STAD | TCGA-CG-4475-01A | TCGA-CG-4475 | FRS2|PPP1R9A | FRS2 | PPP1R9A | 12 | 7 | 1 | 1 | 11 | 12 | 11 | 0.059 | 69864310 | 94903211 | tier1 | 5UTR-CDS | 6776 | NA | 0.38443 |
| STAD | TCGA-CG-4475-01A | TCGA-CG-4475 | FRS2|PTPRB | FRS2 | PTPRB | 12 | 12 | 1 | -1 | 2 | 3 | 3 | 0.065 | 69864310 | 71003119 | tier3 | 5UTR-CDS | 6777 | NA | 0.38201 |
| STAD | TCGA-BR-8373-01A | TCGA-BR-8373 | GDI2|IL2RA | GDI2 | IL2RA | 10 | 10 | -1 | -1 | 2 | 22 | 21 | 0.27 | 5815805 | 6054859 | tier2 | Out-of-frame | 7025 | validated | 0.37008 |
| STAD | TCGA-BR-4357-01A | TCGA-BR-4357 | GLG1|CFDP1 | GLG1 | CFDP1 | 16 | 16 | -1 | -1 | 10 | 6 | 6 | 0.12 | 74640555 | 75339080 | tier1 | Out-of-frame | 7094 | NA | 0.36192 |
| STAD | TCGA-BR-A452-01A | TCGA-BR-A452 | GNB1|C1orf222 | GNB1 | C1orf222 | 1 | 1 | -1 | -1 | 2 | 85 | 76 | 0.53 | 1822259 | 1860321 | tier4 | NA | 7212 | NA | 0 |
| STAD | TCGA-HU-A4HD-01A | TCGA-HU-A4HD | GPATCH1|FCGRT | GPATCH1 | FCGRT | 19 | 19 | 1 | 1 | 4 | 62 | 53 | 2.7 | 33610023 | 50027764 | tier1 | In-frame | 7309 | NA | 0.35528 |
| STAD | TCGA-B7-A5TN-01A | TCGA-B7-A5TN | GPRC5A|NRG1 | GPRC5A | NRG1 | 12 | 8 | 1 | 1 | 38 | 61 | 57 | 0.24 | 13044598 | 32453346 | tier1 | 5UTR-CDS | 7382 | NA | 0.3788 |
| STAD | TCGA-CG-4449-01A | TCGA-CG-4449 | GRB7|CDK12 | GRB7 | CDK12 | 17 | 17 | 1 | 1 | 20 | 11 | 11 | 0.054 | 37902455 | 37680927 | tier1 | Out-of-frame | 7414 | NA | 0.37831 |
| STAD | TCGA-D7-8573-01A | TCGA-D7-8573 | GRB7|IKZF3 | GRB7 | IKZF3 | 17 | 17 | 1 | -1 | 2 | 27 | 26 | 0.77 | 37894386 | 37949186 | tier2 | 5UTR-CDS | 7417 | NA | 0.39032 |
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