Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| STAD | TCGA-VQ-A8P3-01A | TCGA-VQ-A8P3 | CLPTM1|CBLC | CLPTM1 | CBLC | 19 | 19 | 1 | 1 | 6 | 71 | 56 | 0.011 | 45465332 | 45293261 | tier1 | In-frame | 3839 | NA | 0.38002 |
| STAD | TCGA-BR-4357-01A | TCGA-BR-4357 | COPG2|PODXL | COPG2 | PODXL | 7 | 7 | -1 | -1 | 9 | 10 | 10 | 2.3 | 130337709 | 131196192 | tier1 | Out-of-frame | 4063 | NA | 0.36187 |
| STAD | TCGA-VQ-A92D-01A | TCGA-VQ-A92D | CRB3|SAFB | CRB3 | SAFB | 19 | 19 | 1 | 1 | 2 | 4 | 4 | 0.28 | 6464361 | 5626416 | tier2 | 5UTR-CDS | 4187 | NA | 0.3692 |
| STAD | TCGA-VQ-A922-01A | TCGA-VQ-A922 | CSMD2|DNAH14 | CSMD2 | DNAH14 | 1 | 1 | -1 | 1 | 2 | 1 | 1 | 0.046 | 34498195 | 225586222 | tier3 | Out-of-frame | 4271 | NA | 0.34337 |
| STAD | TCGA-VQ-A8PH-01A | TCGA-VQ-A8PH | CTNNA1|REEP2 | CTNNA1 | REEP2 | 5 | 5 | 1 | 1 | 3 | 25 | 19 | 1 | 138163407 | 137776705 | tier1 | Out-of-frame | 4350 | NA | 0.36617 |
| STAD | TCGA-VQ-A91Q-01A | TCGA-VQ-A91Q | DLG1|MUSK | DLG1 | MUSK | 3 | 9 | -1 | 1 | 2 | 67 | 61 | 0.17 | 197009550 | 113457683 | tier2 | Out-of-frame | 4874 | NA | 0.38593 |
| STAD | TCGA-BR-8060-01A | TCGA-BR-8060 | DLG1|PCSK5 | DLG1 | PCSK5 | 3 | 9 | -1 | 1 | 7 | 35 | 33 | 1.7 | 196921296 | 78936338 | tier2 | Out-of-frame | 4877 | NA | 0.38171 |
| STAD | TCGA-D7-A74A-01A | TCGA-D7-A74A | DNAH1|CACNA1D | DNAH1 | CACNA1D | 3 | 3 | 1 | 1 | 2 | 3 | 2 | 0.002 | 52418047 | 53834276 | tier3 | In-frame | 4919 | NA | 0.36182 |
| STAD | TCGA-BR-8289-01A | TCGA-BR-8289 | DNAJC3|CLDN10 | DNAJC3 | CLDN10 | 13 | 13 | 1 | 1 | 4 | 45 | 44 | 0.15 | 96329591 | 96212386 | tier1 | In-frame | 4947 | NA | 0.36974 |
| STAD | TCGA-BR-7716-01A | TCGA-BR-7716 | DNM2|ATG4D | DNM2 | ATG4D | 19 | 19 | 1 | 1 | 8 | 128 | 115 | 0.39 | 10897382 | 10662573 | tier1 | Out-of-frame | 4970 | NA | 0.37857 |
| STAD | TCGA-IN-A6RI-01A | TCGA-IN-A6RI | DNM2|DAND5 | DNM2 | DAND5 | 19 | 19 | 1 | 1 | 44 | 150 | 132 | 0.028 | 10870487 | 13084203 | tier1 | Out-of-frame | 4972 | NA | 0.37766 |
| STAD | TCGA-IN-A6RI-01A | TCGA-IN-A6RI | DNM2|NFIX | DNM2 | NFIX | 19 | 19 | 1 | 1 | 4 | 23 | 21 | 0.095 | 10870487 | 13135835 | tier1 | Out-of-frame | 4977 | NA | 0.38532 |
| STAD | TCGA-IN-A6RI-01A | TCGA-IN-A6RI | DNM2|RFX1 | DNM2 | RFX1 | 19 | 19 | 1 | -1 | 4 | 19 | 18 | 0.25 | 10870487 | 14088898 | tier1 | Out-of-frame | 4985 | NA | 0.38256 |
| STAD | TCGA-BR-8373-01A | TCGA-BR-8373 | DNM2|SLC44A2 | DNM2 | SLC44A2 | 19 | 19 | 1 | 1 | 9 | 50 | 47 | 0.057 | 10893796 | 10745432 | tier1 | Out-of-frame | 4987 | validated | 0.37726 |
| STAD | TCGA-CG-4304-01A | TCGA-CG-4304 | DPY19L4|SDC2 | DPY19L4 | SDC2 | 8 | 8 | 1 | 1 | 4 | 3 | 3 | 0.019 | 95738669 | 97605708 | tier1 | Out-of-frame | 5093 | NA | 0.36808 |
| STAD | TCGA-BR-7901-01A | TCGA-BR-7901 | EDF1|DPP7 | EDF1 | DPP7 | 9 | 9 | -1 | -1 | 5 | 26 | 21 | 0.55 | 139760633 | 140005402 | tier1 | In-frame | 5277 | NA | 0.36428 |
| STAD | TCGA-BR-8486-01A | TCGA-BR-8486 | ENO1|SIAE | ENO1 | SIAE | 1 | 11 | -1 | -1 | 2 | 1 | 1 | 1.2 | 8921061 | 124543777 | tier3 | 3UTR-5UTR | 5588 | non-validated | 0.36534 |
| STAD | TCGA-HF-7132-01A | TCGA-HF-7132 | EPB41L1|C20orf152 | EPB41L1 | C20orf152 | 20 | 20 | 1 | 1 | 3 | 29 | 27 | 0.17 | 34700402 | 34582960 | tier1 | 5UTR-CDS | 5639 | NA | 0 |
| STAD | TCGA-CG-4304-01A | TCGA-CG-4304 | EPB41L1|NDRG3 | EPB41L1 | NDRG3 | 20 | 20 | 1 | -1 | 8 | 12 | 12 | 0.073 | 34700402 | 35282104 | tier1 | 5UTR-CDS | 5641 | NA | 0.36706 |
| STAD | TCGA-FP-8631-01A | TCGA-FP-8631 | EPB41L1|PHF20 | EPB41L1 | PHF20 | 20 | 20 | 1 | 1 | 2 | 5 | 4 | 0.042 | 34680735 | 34501171 | tier4 | 5UTR-CDS | 5644 | NA | 0.37244 |
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