Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| STAD | TCGA-BR-A4QI-01A | TCGA-BR-A4QI | ATF7IP|VIPR2 | ATF7IP | VIPR2 | 12 | 7 | 1 | -1 | 13 | 98 | 88 | 0.016 | 14634119 | 158824560 | tier1 | Out-of-frame | 1613 | NA | 0.36866 |
| STAD | TCGA-BR-A4CR-01A | TCGA-BR-A4CR | ATP11A|ULK4 | ATP11A | ULK4 | 13 | 3 | 1 | -1 | 3 | 42 | 37 | 1.5 | 113530255 | 41831335 | tier1 | In-frame | 1674 | NA | 0.36058 |
| STAD | TCGA-BR-8682-01A | TCGA-BR-8682 | ATP1A1|DDX21 | ATP1A1 | DDX21 | 1 | 10 | 1 | 1 | 2 | 17 | 10 | 2.2 | 116947394 | 70723858 | tier3 | NA | 1689 | non-validated | 0.37023 |
| STAD | TCGA-BR-8289-01A | TCGA-BR-8289 | ATP1A1|IGSF3 | ATP1A1 | IGSF3 | 1 | 1 | 1 | -1 | 8 | 63 | 53 | 0.08 | 116946597 | 117122499 | tier4 | In-frame | 1692 | NA | 0.37204 |
| STAD | TCGA-BR-8289-01A | TCGA-BR-8289 | ATP2B4|RP11-352D3.2 | ATP2B4 | RP11-352D3.2 | 1 | 20 | 1 | -1 | 6 | 59 | 12 | 2.6 | 203596347 | 4053311 | tier1 | 5UTR-CDS | 1727 | NA | 0.37219 |
| STAD | TCGA-CD-8536-01A | TCGA-CD-8536 | ATP8A1|PDS5A | ATP8A1 | PDS5A | 4 | 4 | -1 | -1 | 7 | 21 | 18 | 0.05 | 42551030 | 39865079 | tier1 | In-frame | 1767 | NA | 0.35271 |
| STAD | TCGA-BR-7901-01A | TCGA-BR-7901 | BACE2|WDR81 | BACE2 | WDR81 | 21 | 17 | 1 | 1 | 41 | 115 | 92 | 0.21 | 42540502 | 1638866 | tier1 | Out-of-frame | 1891 | NA | 0.35431 |
| STAD | TCGA-CG-4449-01A | TCGA-CG-4449 | BLM|ABHD2 | BLM | ABHD2 | 15 | 15 | 1 | 1 | 7 | 59 | 53 | 1.4 | 91260671 | 89694908 | tier1 | 5UTR-CDS | 2119 | NA | 0.36718 |
| STAD | TCGA-RD-A7C1-01A | TCGA-RD-A7C1 | BZW2|GAP43 | BZW2 | GAP43 | 7 | 3 | 1 | 1 | 5 | 32 | 24 | 1.5 | 16685913 | 115439641 | tier1 | 5UTR-CDS | 2291 | NA | 0.36914 |
| STAD | TCGA-BR-A4CS-01A | TCGA-BR-A4CS | C21orf63|ABCG1 | C21orf63 | ABCG1 | 21 | 21 | 1 | 1 | 3 | 29 | 26 | 0.25 | 33785321 | 43691180 | tier1 | In-frame | 2657 | NA | 0 |
| STAD | TCGA-CD-A48C-01A | TCGA-CD-A48C | CACNA1C|CLEC2A | CACNA1C | CLEC2A | 12 | 12 | 1 | -1 | 6 | 79 | 72 | 0.42 | 2778201 | 10051575 | tier1 | Out-of-frame | 2853 | NA | 0.36495 |
| STAD | TCGA-BR-8361-01A | TCGA-BR-8361 | CASP8|CFLAR | CASP8 | CFLAR | 2 | 2 | 1 | 1 | 2 | 8 | 7 | 0.038 | 202098835 | 201994452 | tier3 | 5UTR-5UTR | 3022 | NA | 0.37673 |
| STAD | TCGA-RD-A8MV-01A | TCGA-RD-A8MV | CBL|SC5DL | CBL | SC5DL | 11 | 11 | 1 | 1 | 2 | 11 | 11 | 0.074 | 119103405 | 121177095 | tier2 | Out-of-frame | 3074 | NA | 0.38317 |
| STAD | TCGA-CG-4477-01A | TCGA-CG-4477 | CD274|IGFBPL1 | CD274 | IGFBPL1 | 9 | 9 | 1 | -1 | 12 | 12 | 10 | 1.7 | 5465606 | 38409214 | tier1 | CDS-3UTR | 3262 | NA | 0.34288 |
| STAD | TCGA-CG-4449-01A | TCGA-CG-4449 | CD46|MAPKAPK2 | CD46 | MAPKAPK2 | 1 | 1 | 1 | 1 | 51 | 93 | 89 | 1.2 | 207959027 | 206902055 | tier1 | Out-of-frame | 3274 | NA | 0.38524 |
| STAD | TCGA-CG-4449-01A | TCGA-CG-4449 | CD97|EPS15L1 | CD97 | EPS15L1 | 19 | 19 | 1 | -1 | 18 | 7 | 6 | 1.2 | 14492357 | 16528448 | tier1 | Out-of-frame | 3311 | NA | 0.3707 |
| STAD | TCGA-EQ-8122-01A | TCGA-EQ-8122 | CDC6|JUP | CDC6 | JUP | 17 | 17 | 1 | -1 | 148 | 1024 | 929 | 4.7 | 38457860 | 39914036 | tier1 | In-frame | 3362 | NA | 0.3769 |
| STAD | TCGA-BR-8486-01A | TCGA-BR-8486 | CERS6|ABCB11 | CERS6 | ABCB11 | 2 | 2 | 1 | -1 | 8 | 17 | 15 | 0.33 | 169487552 | 169801471 | tier1 | In-frame | 3576 | non-validated | 0.3459 |
| STAD | TCGA-VQ-AA6J-01A | TCGA-VQ-AA6J | CLCN5|PAGE1 | CLCN5 | PAGE1 | X | X | 1 | -1 | 5 | 29 | 27 | 0.067 | 49689924 | 49455977 | tier1 | In-frame | 3767 | NA | 0.35141 |
| STAD | TCGA-HU-8610-01A | TCGA-HU-8610 | CLIC4|C1orf130 | CLIC4 | C1orf130 | 1 | 1 | 1 | 1 | 8 | 30 | 27 | 0.18 | 25072116 | 24927431 | tier1 | Out-of-frame | 3788 | NA | 0 |
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