Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SKCM | TCGA-BF-A5EQ-01A | TCGA-BF-A5EQ | ZNF253|SLC1A6 | ZNF253 | SLC1A6 | 19 | 19 | 1 | -1 | 5 | 3 | 3 | 0.042 | 19976808 | 15083729 | tier1 | In-frame | 20421 | NA | 0 |
| SKCM | TCGA-FW-A3R5-06A | TCGA-FW-A3R5 | ZNF420|SPINT2 | ZNF420 | SPINT2 | 19 | 19 | 1 | 1 | 3 | 2 | 2 | 0.66 | 37569472 | 38774267 | tier1 | 5UTR-CDS | 20492 | NA | 0 |
| SKCM | TCGA-D3-A2JE-06A | TCGA-D3-A2JE | ZNF544|GRIN2D | ZNF544 | GRIN2D | 19 | 19 | 1 | 1 | 17 | 13 | 10 | 7.8 | 58741828 | 48907991 | tier1 | 5UTR-CDS | 20546 | NA | 0 |
| SKCM | TCGA-ER-A19L-06A | TCGA-ER-A19L | ZNF79|SLC2A8 | ZNF79 | SLC2A8 | 9 | 9 | 1 | 1 | 5 | 6 | 5 | 1.9 | 130198282 | 130162186 | tier1 | Out-of-frame | 20663 | non-validated | 0 |
| SKCM | TCGA-EB-A42Z-01A | TCGA-EB-A42Z | ZNRF3|XBP1 | ZNRF3 | XBP1 | 22 | 22 | 1 | -1 | 9 | 3 | 3 | 0.037 | 29280054 | 29195141 | tier1 | Out-of-frame | 20705 | NA | 0 |
| SKCM | TCGA-YG-AA3P-06A | TCGA-YG-AA3P | ZSWIM3|PTPRT | ZSWIM3 | PTPRT | 20 | 20 | 1 | -1 | 4 | 1 | 1 | 0.36 | 44486619 | 41514572 | tier1 | Out-of-frame | 20715 | NA | 0 |
| STAD | TCGA-BR-8590-01A | TCGA-BR-8590 | ABCC3|ACSF2 | ABCC3 | ACSF2 | 17 | 17 | 1 | 1 | 8 | 17 | 16 | 0.41 | 48712342 | 48548389 | tier1 | In-frame | 60 | NA | 0.34919 |
| STAD | TCGA-HU-A4GH-01A | TCGA-HU-A4GH | ABCC3|XYLT2 | ABCC3 | XYLT2 | 17 | 17 | 1 | 1 | 3 | 56 | 55 | 0.18 | 48755580 | 48435568 | tier1 | In-frame | 62 | NA | 0.34721 |
| STAD | TCGA-VQ-A8DZ-01A | TCGA-VQ-A8DZ | ABR|BAI1 | ABR | BAI1 | 17 | 8 | -1 | 1 | 3 | 26 | 24 | 0.36 | 953290 | 143599499 | tier1 | In-frame | 121 | NA | 0.37166 |
| STAD | TCGA-BR-8680-01A | TCGA-BR-8680 | ACVR1B|SUPT16H | ACVR1B | SUPT16H | 12 | 14 | 1 | -1 | 2 | 4 | 3 | 0.063 | 52390862 | 21829491 | tier3 | 3UTR-CDS | 395 | NA | 0.38919 |
| STAD | TCGA-BR-8060-01A | TCGA-BR-8060 | ADNP|KCNG1 | ADNP | KCNG1 | 20 | 20 | -1 | -1 | 3 | 13 | 13 | 1.7 | 49547363 | 49626901 | tier1 | 5UTR-5UTR | 528 | NA | 0.35853 |
| STAD | TCGA-BR-8060-01A | TCGA-BR-8060 | AHCYL1|GNAI3 | AHCYL1 | GNAI3 | 1 | 1 | 1 | 1 | 15 | 48 | 45 | 0.46 | 110527794 | 110125059 | tier1 | Out-of-frame | 677 | NA | 0.37395 |
| STAD | TCGA-R5-A805-01A | TCGA-R5-A805 | AKAP13|MUSK | AKAP13 | MUSK | 15 | 9 | 1 | 1 | 2 | 29 | 27 | 0.45 | 86228104 | 113509921 | tier2 | In-frame | 730 | NA | 0.38818 |
| STAD | TCGA-RD-A8MW-01A | TCGA-RD-A8MW | ANKIB1|TNFRSF17 | ANKIB1 | TNFRSF17 | 7 | 16 | 1 | 1 | 4 | 16 | 14 | 0.24 | 91875833 | 12060052 | tier1 | 5UTR-CDS | 931 | NA | 0.36856 |
| STAD | TCGA-CG-4436-01A | TCGA-CG-4436 | ANO10|SCN5A | ANO10 | SCN5A | 3 | 3 | -1 | -1 | 2 | 1 | 1 | 0.023 | 43474103 | 38629064 | tier3 | In-frame | 1027 | NA | 0.36441 |
| STAD | TCGA-CG-4443-01A | TCGA-CG-4443 | ASAH2|SGMS1 | ASAH2 | SGMS1 | 10 | 10 | -1 | -1 | 3 | 9 | 8 | 0.18 | 52002962 | 52104105 | tier1 | CDS-5UTR | 1475 | non-validated | 0.34891 |
| STAD | TCGA-BR-A4CR-01A | TCGA-BR-A4CR | ASAP1|RIMS2 | ASAP1 | RIMS2 | 8 | 8 | -1 | 1 | 2 | 25 | 23 | 0.14 | 131370263 | 105105699 | tier4 | In-frame | 1484 | NA | 0.37504 |
| STAD | TCGA-CG-4449-01A | TCGA-CG-4449 | ASCC1|CDH23 | ASCC1 | CDH23 | 10 | 10 | -1 | 1 | 3 | 9 | 9 | 3.9 | 73956569 | 73537437 | tier1 | In-frame | 1497 | NA | 0.36361 |
| STAD | TCGA-BR-4357-01A | TCGA-BR-4357 | ASH1L|SLC28A3 | ASH1L | SLC28A3 | 1 | 9 | -1 | -1 | 5 | 15 | 14 | 0.17 | 155531944 | 86909190 | tier1 | 5UTR-CDS | 1528 | NA | 0.36022 |
| STAD | TCGA-VQ-A8E2-01A | TCGA-VQ-A8E2 | ASXL1|TM9SF4 | ASXL1 | TM9SF4 | 20 | 20 | 1 | 1 | 8 | 57 | 49 | 0.083 | 30956926 | 30720816 | tier1 | CDS-5UTR | 1557 | NA | 0.34223 |
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