Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SKCM | TCGA-EB-A42Z-01A | TCGA-EB-A42Z | UBN1|BLNK | UBN1 | BLNK | 16 | 10 | 1 | -1 | 4 | 1 | 1 | 0.11 | 4927475 | 98006805 | tier3 | Out-of-frame | 19127 | NA | 0 |
| SKCM | TCGA-D3-A1Q1-06A | TCGA-D3-A1Q1 | USP10|ATP2C2 | USP10 | ATP2C2 | 16 | 16 | 1 | 1 | 7 | 35 | 30 | 0.42 | 84773975 | 84442011 | tier1 | Out-of-frame | 19301 | validated | 0 |
| SKCM | TCGA-D3-A51G-06A | TCGA-D3-A51G | USP13|KCNMB2 | USP13 | KCNMB2 | 3 | 3 | 1 | 1 | 802 | 497 | 401 | 0.22 | 179460138 | 178560441 | tier1 | Out-of-frame | 19308 | NA | 0 |
| SKCM | TCGA-BF-A5EQ-01A | TCGA-BF-A5EQ | USP8|BDP1 | USP8 | BDP1 | 15 | 5 | 1 | 1 | 2 | 1 | 1 | 0.054 | 50769696 | 70786811 | tier2 | Out-of-frame | 19433 | NA | 0 |
| SKCM | TCGA-BF-A1Q0-01A | TCGA-BF-A1Q0 | UTP20|ANKS1B | UTP20 | ANKS1B | 12 | 12 | 1 | -1 | 6 | 3 | 3 | 0.36 | 101711441 | 99447087 | tier1 | Out-of-frame | 19450 | NA | 0 |
| SKCM | TCGA-ER-A196-01A | TCGA-ER-A196 | VAC14|CDH8 | VAC14 | CDH8 | 16 | 16 | -1 | -1 | 23 | 25 | 24 | 0.16 | 70765398 | 61935377 | tier1 | Out-of-frame | 19493 | NA | 0 |
| SKCM | TCGA-ER-A2NE-06A | TCGA-ER-A2NE | VAT1|CTNND1 | VAT1 | CTNND1 | 17 | 11 | -1 | 1 | 3 | 5 | 5 | 0.64 | 41166624 | 57574387 | tier1 | 3UTR-CDS | 19515 | NA | 0 |
| SKCM | TCGA-FS-A1ZE-06A | TCGA-FS-A1ZE | VPS13D|TNFRSF1B | VPS13D | TNFRSF1B | 1 | 1 | 1 | 1 | 21 | 7 | 7 | 2.1 | 12476880 | 12252488 | tier1 | Out-of-frame | 19633 | NA | 0 |
| SKCM | TCGA-D3-A5GS-06A | TCGA-D3-A5GS | WARS2|NTNG1 | WARS2 | NTNG1 | 1 | 1 | -1 | 1 | 25 | 15 | 13 | 0.47 | 119618973 | 108023233 | tier1 | Out-of-frame | 19711 | NA | 0 |
| SKCM | TCGA-ER-A19W-06A | TCGA-ER-A19W | WASF2|FGR | WASF2 | FGR | 1 | 1 | -1 | -1 | 29 | 8 | 7 | 0.55 | 27816497 | 27951662 | tier1 | 5UTR-5UTR | 19731 | NA | 0 |
| SKCM | TCGA-EE-A2MN-06A | TCGA-EE-A2MN | WDR59|CDH11 | WDR59 | CDH11 | 16 | 16 | -1 | -1 | 5 | 12 | 11 | 2.5 | 75018862 | 64982690 | tier1 | Out-of-frame | 19787 | NA | 0 |
| SKCM | TCGA-D3-A1Q4-06A | TCGA-D3-A1Q4 | WWP1|ESRP1 | WWP1 | ESRP1 | 8 | 8 | 1 | 1 | 25 | 19 | 19 | 0.052 | 87355159 | 95674729 | tier1 | 5UTR-CDS | 19932 | NA | 0 |
| SKCM | TCGA-EE-A2MH-06A | TCGA-EE-A2MH | WWP1|ZNF704 | WWP1 | ZNF704 | 8 | 8 | 1 | -1 | 4 | 5 | 5 | 0.2 | 87414432 | 81733850 | tier1 | CDS-5UTR | 19936 | NA | 0 |
| SKCM | TCGA-FS-A1ZD-06A | TCGA-FS-A1ZD | XPR1|NCF2 | XPR1 | NCF2 | 1 | 1 | 1 | -1 | 14 | 9 | 7 | 0.22 | 180651547 | 183546842 | tier1 | Out-of-frame | 19976 | validated | 0 |
| SKCM | TCGA-EE-A3J4-06A | TCGA-EE-A3J4 | ZBTB20|LSAMP | ZBTB20 | LSAMP | 3 | 3 | -1 | -1 | 10 | 10 | 9 | 0.81 | 114619151 | 115529261 | tier1 | 5UTR-CDS | 20088 | NA | 0 |
| SKCM | TCGA-FS-A1ZJ-06A | TCGA-FS-A1ZJ | ZBTB20|LSAMP | ZBTB20 | LSAMP | 3 | 3 | -1 | -1 | 3 | 2 | 2 | 0.81 | 114790066 | 115571464 | tier1 | 5UTR-CDS | 20092 | NA | 0 |
| SKCM | TCGA-D9-A6E9-06A | TCGA-D9-A6E9 | ZCRB1|LIMA1 | ZCRB1 | LIMA1 | 12 | 12 | -1 | -1 | 42 | 43 | 38 | 0.021 | 42717821 | 50616268 | tier1 | In-frame | 20190 | NA | 0 |
| SKCM | TCGA-D3-A1Q3-06A | TCGA-D3-A1Q3 | ZDHHC11|TPST2 | ZDHHC11 | TPST2 | 5 | 22 | -1 | -1 | 4 | 2 | 2 | 2.5 | 840610 | 26924228 | tier1 | Out-of-frame | 20192 | NA | 0 |
| SKCM | TCGA-GN-A26D-06A | TCGA-GN-A26D | ZDHHC9|SLCO1A2 | ZDHHC9 | SLCO1A2 | X | 12 | -1 | -1 | 116 | 46 | 42 | 1.3 | 128977235 | 21487643 | tier1 | 5UTR-5UTR | 20232 | NA | 0 |
| SKCM | TCGA-ER-A3ET-06A | TCGA-ER-A3ET | ZNF134|RYR1 | ZNF134 | RYR1 | 19 | 19 | 1 | 1 | 7 | 4 | 4 | 0.046 | 58125871 | 39033987 | tier4 | 5UTR-CDS | 20362 | NA | 0 |
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