Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SKCM | TCGA-ER-A197-06A | TCGA-ER-A197 | TMEM117|DYNC1LI2 | TMEM117 | DYNC1LI2 | 12 | 16 | 1 | -1 | 3 | 3 | 1 | 0.44 | 44238731 | 66764126 | tier3 | Out-of-frame | 17934 | NA | 0 |
| SKCM | TCGA-D3-A51H-06A | TCGA-D3-A51H | TMEM117|KCNC2 | TMEM117 | KCNC2 | 12 | 12 | 1 | -1 | 109 | 90 | 79 | 0.55 | 44238731 | 75445097 | tier1 | Out-of-frame | 17935 | NA | 0 |
| SKCM | TCGA-EE-A2MS-06A | TCGA-EE-A2MS | TMEM117|MCRS1 | TMEM117 | MCRS1 | 12 | 12 | 1 | -1 | 5 | 5 | 4 | 2.3 | 44238731 | 49959998 | tier1 | In-frame | 17938 | NA | 0 |
| SKCM | TCGA-EB-A5KH-06A | TCGA-EB-A5KH | TMEM167A|PAM | TMEM167A | PAM | 5 | 5 | -1 | 1 | 11 | 10 | 9 | 0.26 | 82357696 | 102295579 | tier1 | Out-of-frame | 17985 | NA | 0 |
| SKCM | TCGA-D3-A2JN-06A | TCGA-D3-A2JN | TNFRSF1A|CHD4 | TNFRSF1A | CHD4 | 12 | 12 | -1 | -1 | 7 | 7 | 7 | 0.043 | 6450942 | 6682435 | tier1 | In-frame | 18340 | NA | 0 |
| SKCM | TCGA-ER-A19H-06A | TCGA-ER-A19H | TNS3|PKD1L1 | TNS3 | PKD1L1 | 7 | 7 | -1 | -1 | 15 | 9 | 9 | 0.71 | 47546505 | 47894863 | tier1 | 5UTR-CDS | 18416 | NA | 0 |
| SKCM | TCGA-D9-A1X3-01A | TCGA-D9-A1X3 | TRHDE|NUP107 | TRHDE | NUP107 | 12 | 12 | 1 | 1 | 2 | 3 | 3 | 2.6 | 72962436 | 69128488 | tier3 | Out-of-frame | 18598 | NA | 0 |
| SKCM | TCGA-EB-A44Q-06A | TCGA-EB-A44Q | TRIO|LIFR | TRIO | LIFR | 5 | 5 | 1 | -1 | 5 | 2 | 2 | 0.094 | 14143991 | 38489347 | tier1 | In-frame | 18669 | NA | 0 |
| SKCM | TCGA-FS-A4F4-06A | TCGA-FS-A4F4 | TRIO|SLC9A3 | TRIO | SLC9A3 | 5 | 5 | 1 | -1 | 13 | 23 | 19 | 1 | 14394239 | 492186 | tier2 | Out-of-frame | 18672 | NA | 0 |
| SKCM | TCGA-EE-A29V-06A | TCGA-EE-A29V | TSPAN9|KLRG1 | TSPAN9 | KLRG1 | 12 | 12 | 1 | 1 | 30 | 16 | 16 | 0.71 | 3192885 | 9161571 | tier1 | 5UTR-CDS | 18811 | NA | 0 |
| SKCM | TCGA-ER-A2NE-06A | TCGA-ER-A2NE | TSPAN9|SLC2A13 | TSPAN9 | SLC2A13 | 12 | 12 | 1 | -1 | 3 | 2 | 2 | 3.8 | 3192885 | 40345167 | tier1 | 5UTR-CDS | 18816 | NA | 0 |
| SKCM | TCGA-FS-A4F4-06A | TCGA-FS-A4F4 | TSPO|CDH18 | TSPO | CDH18 | 22 | 5 | 1 | -1 | 77 | 81 | 73 | 100 | 43557196 | 19981287 | tier1 | CDS-5UTR | 18819 | NA | 0 |
| SKCM | TCGA-Z2-AA3V-06A | TCGA-Z2-AA3V | TTYH3|ASPSCR1 | TTYH3 | ASPSCR1 | 7 | 17 | 1 | 1 | 10 | 12 | 11 | 0.008 | 2671912 | 79966913 | tier1 | In-frame | 18917 | NA | 0 |
| SKCM | TCGA-Z2-AA3V-06A | TCGA-Z2-AA3V | TTYH3|C7orf50 | TTYH3 | C7orf50 | 7 | 7 | 1 | -1 | 8 | 11 | 11 | 0.002 | 2671912 | 1049779 | tier1 | In-frame | 18918 | NA | 0 |
| SKCM | TCGA-EE-A29C-06A | TCGA-EE-A29C | TTYH3|DDX27 | TTYH3 | DDX27 | 7 | 20 | 1 | 1 | 2 | 13 | 13 | 0.037 | 2704434 | 47849303 | tier4 | NA | 18919 | NA | 0 |
| SKCM | TCGA-3N-A9WD-06A | TCGA-3N-A9WD | TTYH3|MAD1L1 | TTYH3 | MAD1L1 | 7 | 7 | 1 | -1 | 5 | 4 | 4 | 0.15 | 2671912 | 1938026 | tier1 | Out-of-frame | 18920 | NA | 0 |
| SKCM | TCGA-FS-A1YW-06A | TCGA-FS-A1YW | TTYH3|MAD1L1 | TTYH3 | MAD1L1 | 7 | 7 | 1 | -1 | 46 | 26 | 24 | 0.15 | 2686656 | 1976533 | tier1 | Out-of-frame | 18922 | NA | 0 |
| SKCM | TCGA-Z2-AA3V-06A | TCGA-Z2-AA3V | TTYH3|MAD1L1 | TTYH3 | MAD1L1 | 7 | 7 | 1 | -1 | 53 | 72 | 71 | 0.15 | 2671912 | 1855864 | tier1 | In-frame | 18923 | NA | 0 |
| SKCM | TCGA-EB-A3Y7-01A | TCGA-EB-A3Y7 | TTYH3|NOC4L | TTYH3 | NOC4L | 7 | 12 | 1 | 1 | 4 | 3 | 3 | 0.08 | 2671912 | 132635526 | tier1 | Out-of-frame | 18924 | NA | 0 |
| SKCM | TCGA-FR-A3YO-06A | TCGA-FR-A3YO | UBASH3B|GRIK4 | UBASH3B | GRIK4 | 11 | 11 | 1 | 1 | 29 | 15 | 15 | 1.3 | 122526918 | 120823564 | tier1 | Out-of-frame | 19051 | NA | 0 |
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