Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SKCM | TCGA-ER-A197-06A | TCGA-ER-A197 | SLC9A2|C2orf55 | SLC9A2 | C2orf55 | 2 | 2 | 1 | -1 | 3 | 1 | 1 | 0.75 | 103236596 | 99414000 | tier2 | In-frame | 16297 | NA | 0 |
| SKCM | TCGA-ER-A19T-01A | TCGA-ER-A19T | SMAP1|FAR2 | SMAP1 | FAR2 | 6 | 12 | 1 | 1 | 2 | 1 | 1 | 0.071 | 71508440 | 29423345 | tier2 | CDS-5UTR | 16360 | validated | 0 |
| SKCM | TCGA-D3-A3CF-06A | TCGA-D3-A3CF | SNTG2|RBKS | SNTG2 | RBKS | 2 | 2 | 1 | -1 | 19 | 19 | 18 | 100 | 1320147 | 28055644 | tier1 | Out-of-frame | 16522 | NA | 0 |
| SKCM | TCGA-D9-A4Z5-01A | TCGA-D9-A4Z5 | SOS2|NRXN3 | SOS2 | NRXN3 | 14 | 14 | -1 | 1 | 2 | 1 | 1 | 3.4 | 50600841 | 79423585 | tier3 | Out-of-frame | 16613 | NA | 0 |
| SKCM | TCGA-ER-A19N-06A | TCGA-ER-A19N | SPAG9|RDX | SPAG9 | RDX | 17 | 11 | -1 | -1 | 74 | 87 | 81 | 0.38 | 49156945 | 110102758 | tier1 | Out-of-frame | 16664 | NA | 0 |
| SKCM | TCGA-EB-A24D-01A | TCGA-EB-A24D | SPTAN1|MAPKAP1 | SPTAN1 | MAPKAP1 | 9 | 9 | 1 | -1 | 91 | 40 | 37 | 0.99 | 131356652 | 128268696 | tier1 | Out-of-frame | 16788 | non-validated | 0 |
| SKCM | TCGA-EE-A2MI-06A | TCGA-EE-A2MI | SSH2|C10orf54 | SSH2 | C10orf54 | 17 | 10 | -1 | -1 | 19 | 19 | 19 | 0.011 | 28256956 | 73521783 | tier1 | Out-of-frame | 16912 | non-validated | 0 |
| SKCM | TCGA-D3-A3BZ-06A | TCGA-D3-A3BZ | STAG1|P2RY13 | STAG1 | P2RY13 | 3 | 3 | -1 | -1 | 5 | 2 | 2 | 0.6 | 136471037 | 151046795 | tier1 | 5UTR-CDS | 16984 | NA | 0 |
| SKCM | TCGA-EE-A29D-06A | TCGA-EE-A29D | STIM1|PGAP2 | STIM1 | PGAP2 | 11 | 11 | 1 | 1 | 5 | 8 | 8 | 0.41 | 3877639 | 3829524 | tier1 | In-frame | 17039 | NA | 0 |
| SKCM | TCGA-GN-A8LK-06A | TCGA-GN-A8LK | STIM1|PNPLA2 | STIM1 | PNPLA2 | 11 | 11 | 1 | 1 | 20 | 12 | 11 | 0.029 | 3877639 | 821628 | tier1 | In-frame | 17040 | NA | 0 |
| SKCM | TCGA-BF-AAP1-01A | TCGA-BF-AAP1 | SYT14|HSD11B1 | SYT14 | HSD11B1 | 1 | 1 | 1 | 1 | 4 | 2 | 2 | 0.91 | 210126101 | 209905781 | tier1 | In-frame | 17275 | NA | 0 |
| SKCM | TCGA-FW-A3TV-06A | TCGA-FW-A3TV | TAF3|SVIL | TAF3 | SVIL | 10 | 10 | 1 | -1 | 11 | 21 | 21 | 0.11 | 7866523 | 29858241 | tier1 | CDS-5UTR | 17330 | NA | 0 |
| SKCM | TCGA-EE-A2MR-06A | TCGA-EE-A2MR | TAOK1|ASGR2 | TAOK1 | ASGR2 | 17 | 17 | 1 | -1 | 15 | 16 | 2 | 2.9 | 27835150 | 7018130 | tier1 | CDS-5UTR | 17392 | NA | 0 |
| SKCM | TCGA-EB-A82C-01A | TCGA-EB-A82C | TGFBR3|NRD1 | TGFBR3 | NRD1 | 1 | 1 | -1 | -1 | 11 | 4 | 3 | 0.26 | 92327028 | 52306186 | tier1 | Out-of-frame | 17744 | NA | 0 |
| SKCM | TCGA-EE-A2GE-06A | TCGA-EE-A2GE | TGM2|ACVRL1 | TGM2 | ACVRL1 | 20 | 12 | -1 | 1 | 2 | 2 | 2 | 0.17 | 36756863 | 52306155 | tier3 | 3UTR-5UTR | 17750 | NA | 0 |
| SKCM | TCGA-ER-A197-06A | TCGA-ER-A197 | TJP1|SLC20A1 | TJP1 | SLC20A1 | 15 | 2 | -1 | 1 | 29 | 11 | 8 | 0.96 | 30114205 | 113405230 | tier1 | Out-of-frame | 17839 | NA | 0 |
| SKCM | TCGA-FS-A1ZK-06A | TCGA-FS-A1ZK | TJP2|RPRD2 | TJP2 | RPRD2 | 9 | 1 | 1 | 1 | 8 | 2 | 1 | 0.008 | 71789348 | 150429764 | tier2 | In-frame | 17844 | validated | 0 |
| SKCM | TCGA-BF-A5EO-01A | TCGA-BF-A5EO | TMCO7|CDH1 | TMCO7 | CDH1 | 16 | 16 | 1 | 1 | 3 | 3 | 3 | 2.9 | 68877614 | 68772200 | tier1 | Out-of-frame | 17912 | NA | 0 |
| SKCM | TCGA-ER-A19T-01A | TCGA-ER-A19T | TMEM106A|NMT1 | TMEM106A | NMT1 | 17 | 17 | 1 | 1 | 2 | 1 | 1 | 0.14 | 41365910 | 43173562 | tier4 | Out-of-frame | 17927 | non-validated | 0 |
| SKCM | TCGA-EE-A20I-06A | TCGA-EE-A20I | TMEM117|COL25A1 | TMEM117 | COL25A1 | 12 | 4 | 1 | -1 | 6 | 1 | 1 | 0.076 | 44338145 | 109862593 | tier2 | Out-of-frame | 17933 | NA | 0 |
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