Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SKCM | TCGA-EE-A2GP-06A | TCGA-EE-A2GP | SDC3|CHD1 | SDC3 | CHD1 | 1 | 5 | -1 | -1 | 2 | 26 | 25 | 1.4 | 31342314 | 98219587 | tier4 | NA | 15464 | NA | 0 |
| SKCM | TCGA-EE-A29E-06A | TCGA-EE-A29E | SDCBP|BIRC6 | SDCBP | BIRC6 | 8 | 2 | 1 | 1 | 2 | 19 | 14 | 0.58 | 59495417 | 32820101 | tier4 | 3UTR-CDS | 15474 | NA | 0 |
| SKCM | TCGA-ER-A19H-06A | TCGA-ER-A19H | SDCBP|ESF1 | SDCBP | ESF1 | 8 | 20 | 1 | -1 | 2 | 21 | 12 | 0.034 | 59495417 | 13743523 | tier4 | NA | 15475 | NA | 0 |
| SKCM | TCGA-D3-A1Q4-06A | TCGA-D3-A1Q4 | SEMA3C|PPP1R12C | SEMA3C | PPP1R12C | 7 | 19 | -1 | -1 | 126 | 114 | 8 | 0.15 | 80418622 | 55614936 | tier1 | In-frame | 15545 | NA | 0 |
| SKCM | TCGA-FS-A1ZB-06A | TCGA-FS-A1ZB | SEMA3E|TSGA14 | SEMA3E | TSGA14 | 7 | 7 | -1 | -1 | 19 | 23 | 23 | 0.25 | 83277744 | 130056807 | tier1 | In-frame | 15548 | NA | 0 |
| SKCM | TCGA-EB-A5KH-06A | TCGA-EB-A5KH | SEMA5A|RBFOX2 | SEMA5A | RBFOX2 | 5 | 22 | -1 | -1 | 33 | 10 | 9 | 0.24 | 9545696 | 36157515 | tier1 | 5UTR-CDS | 15565 | NA | 0 |
| SKCM | TCGA-DA-A1HW-06A | TCGA-DA-A1HW | SERGEF|KCNC1 | SERGEF | KCNC1 | 11 | 11 | -1 | 1 | 7 | 6 | 1 | 0.38 | 17981017 | 17793212 | tier2 | In-frame | 15628 | validated | 0 |
| SKCM | TCGA-FW-A3I3-06A | TCGA-FW-A3I3 | SERINC5|MYO10 | SERINC5 | MYO10 | 5 | 5 | -1 | -1 | 8 | 11 | 10 | 1.9 | 79498705 | 16704794 | tier1 | In-frame | 15642 | NA | 0 |
| SKCM | TCGA-W3-A825-06A | TCGA-W3-A825 | SETD7|NPY5R | SETD7 | NPY5R | 4 | 4 | -1 | 1 | 42 | 34 | 30 | 0.84 | 140468074 | 164266866 | tier1 | CDS-5UTR | 15709 | NA | 0 |
| SKCM | TCGA-ER-A19M-06A | TCGA-ER-A19M | SFMBT1|PTPRG | SFMBT1 | PTPRG | 3 | 3 | -1 | 1 | 6 | 6 | 6 | 1.4 | 53079832 | 61975299 | tier1 | 5UTR-CDS | 15739 | NA | 0 |
| SKCM | TCGA-EE-A2MS-06A | TCGA-EE-A2MS | SH3KBP1|VSIG1 | SH3KBP1 | VSIG1 | X | X | -1 | 1 | 23 | 28 | 28 | 0.56 | 19854243 | 107301268 | tier1 | Out-of-frame | 15826 | NA | 0 |
| SKCM | TCGA-EB-A4XL-01A | TCGA-EB-A4XL | SKAP1|CALCOCO2 | SKAP1 | CALCOCO2 | 17 | 17 | -1 | 1 | 4 | 3 | 3 | 0.017 | 46423267 | 46919060 | tier1 | CDS-5UTR | 15968 | NA | 0 |
| SKCM | TCGA-Z2-AA3S-06A | TCGA-Z2-AA3S | SLC16A5|KCTD2 | SLC16A5 | KCTD2 | 17 | 17 | 1 | 1 | 3 | 1 | 1 | 0.94 | 73094276 | 73059113 | tier2 | Out-of-frame | 16030 | NA | 0 |
| SKCM | TCGA-EB-A44Q-06A | TCGA-EB-A44Q | SLC16A7|GOLPH3 | SLC16A7 | GOLPH3 | 12 | 5 | 1 | -1 | 5 | 9 | 9 | 0.13 | 59990017 | 32135792 | tier1 | 5UTR-CDS | 16035 | NA | 0 |
| SKCM | TCGA-YD-A89C-06A | TCGA-YD-A89C | SLC22A23|LRRC49 | SLC22A23 | LRRC49 | 6 | 15 | -1 | 1 | 88 | 87 | 78 | 2.3 | 3410422 | 71196891 | tier1 | Out-of-frame | 16069 | NA | 0 |
| SKCM | TCGA-EE-A3J7-06A | TCGA-EE-A3J7 | SLC25A36|CLSTN2 | SLC25A36 | CLSTN2 | 3 | 3 | 1 | 1 | 56 | 44 | 41 | 2.8 | 140682069 | 139894793 | tier1 | In-frame | 16111 | NA | 0 |
| SKCM | TCGA-D3-A3CC-06A | TCGA-D3-A3CC | SLC27A1|SUV420H2 | SLC27A1 | SUV420H2 | 19 | 19 | 1 | 1 | 7 | 2 | 2 | 0.083 | 17581516 | 55857581 | tier1 | Out-of-frame | 16123 | NA | 0 |
| SKCM | TCGA-WE-A8ZX-06A | TCGA-WE-A8ZX | SLC2A13|FAM186A | SLC2A13 | FAM186A | 12 | 12 | -1 | -1 | 7 | 4 | 3 | 0.59 | 40499055 | 50727886 | tier1 | Out-of-frame | 16131 | NA | 0 |
| SKCM | TCGA-FS-A1ZK-06A | TCGA-FS-A1ZK | SLC3A2|GRAP2 | SLC3A2 | GRAP2 | 11 | 22 | 1 | 1 | 76 | 49 | 44 | 4 | 62653080 | 40365415 | tier4 | In-frame | 16217 | validated | 0 |
| SKCM | TCGA-EB-A82C-01A | TCGA-EB-A82C | SLC6A17|DPYD | SLC6A17 | DPYD | 1 | 1 | 1 | -1 | 2 | 1 | 1 | 1 | 110719361 | 97564188 | tier2 | In-frame | 16282 | NA | 0 |
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