Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SKCM | TCGA-D9-A4Z3-01A | TCGA-D9-A4Z3 | REV3L|FYN | REV3L | FYN | 6 | 6 | -1 | -1 | 2 | 2 | 2 | 0.4 | 111803953 | 112041265 | tier3 | CDS-5UTR | 14576 | NA | 0 |
| SKCM | TCGA-BF-A1Q0-01A | TCGA-BF-A1Q0 | RGL1|HMCN1 | RGL1 | HMCN1 | 1 | 1 | 1 | 1 | 5 | 18 | 18 | 0.27 | 183775619 | 185815158 | tier1 | Out-of-frame | 14624 | NA | 0 |
| SKCM | TCGA-DA-A95Y-06A | TCGA-DA-A95Y | RNASEH1|DYSF | RNASEH1 | DYSF | 2 | 2 | -1 | 1 | 10 | 2 | 2 | 0.13 | 3599734 | 71871095 | tier1 | Out-of-frame | 14720 | NA | 0 |
| SKCM | TCGA-FS-A1ZJ-06A | TCGA-FS-A1ZJ | RNF130|HRH2 | RNF130 | HRH2 | 5 | 5 | -1 | 1 | 38 | 41 | 37 | 0.007 | 179467453 | 175109712 | tier1 | CDS-5UTR | 14760 | NA | 0 |
| SKCM | TCGA-ER-A3EV-06A | TCGA-ER-A3EV | ROBO1|HMCN1 | ROBO1 | HMCN1 | 3 | 1 | -1 | 1 | 8 | 2 | 2 | 0.033 | 78987751 | 185966561 | tier1 | In-frame | 14866 | NA | 0 |
| SKCM | TCGA-EB-A4IQ-01A | TCGA-EB-A4IQ | ROBO1|SEMA5B | ROBO1 | SEMA5B | 3 | 3 | -1 | -1 | 8 | 3 | 1 | 1.3 | 78688894 | 122634737 | tier3 | Out-of-frame | 14870 | NA | 0 |
| SKCM | TCGA-D9-A6EC-06A | TCGA-D9-A6EC | ROBO1|THAP4 | ROBO1 | THAP4 | 3 | 2 | -1 | -1 | 160 | 93 | 78 | 0.18 | 78742498 | 242545888 | tier1 | In-frame | 14871 | NA | 0 |
| SKCM | TCGA-ER-A2NG-06A | TCGA-ER-A2NG | ROR1|IL12RB2 | ROR1 | IL12RB2 | 1 | 1 | 1 | 1 | 2 | 2 | 2 | 0.24 | 64475048 | 67787285 | tier2 | In-frame | 14901 | NA | 0 |
| SKCM | TCGA-EE-A2GL-06A | TCGA-EE-A2GL | RP2|CHST7 | RP2 | CHST7 | X | X | 1 | 1 | 16 | 17 | 15 | 0.31 | 46696637 | 46457195 | tier1 | CDS-3UTR | 14956 | NA | 0 |
| SKCM | TCGA-D9-A4Z6-01A | TCGA-D9-A4Z6 | RPL18|SLC38A5 | RPL18 | SLC38A5 | 19 | X | -1 | -1 | 2 | 68 | 1 | 0.36 | 49118590 | 48327824 | tier3 | NA | 14985 | NA | 0 |
| SKCM | TCGA-EE-A2MT-06A | TCGA-EE-A2MT | RPL8|GLG1 | RPL8 | GLG1 | 8 | 16 | -1 | -1 | 2 | 1 | 1 | 0.098 | 146015154 | 74566051 | tier3 | 3UTR-CDS | 15003 | NA | 0 |
| SKCM | TCGA-GN-A26D-06A | TCGA-GN-A26D | RSF1|TRPC6 | RSF1 | TRPC6 | 11 | 11 | -1 | -1 | 14 | 14 | 14 | 0.55 | 77475643 | 101375529 | tier1 | Out-of-frame | 15154 | NA | 0 |
| SKCM | TCGA-DA-A3F5-06A | TCGA-DA-A3F5 | RUNX1|IFNAR1 | RUNX1 | IFNAR1 | 21 | 21 | -1 | 1 | 25 | 7 | 5 | 0.46 | 36206707 | 34725064 | tier4 | Out-of-frame | 15179 | non-validated | 0 |
| SKCM | TCGA-FS-A1ZK-06A | TCGA-FS-A1ZK | SBF1|ODZ4 | SBF1 | ODZ4 | 22 | 11 | -1 | -1 | 29 | 23 | 20 | 0.26 | 50905767 | 78468066 | tier1 | Out-of-frame | 15329 | non-validated | 0 |
| SKCM | TCGA-EE-A2GR-06A | TCGA-EE-A2GR | SBF2|CNTN5 | SBF2 | CNTN5 | 11 | 11 | -1 | 1 | 11 | 14 | 13 | 0.14 | 10215449 | 100061858 | tier1 | Out-of-frame | 15331 | NA | 0 |
| SKCM | TCGA-GN-A268-06A | TCGA-GN-A268 | SBF2|MRGPRX3 | SBF2 | MRGPRX3 | 11 | 11 | -1 | 1 | 4 | 4 | 3 | 0.003 | 10315562 | 18154161 | tier1 | CDS-5UTR | 15334 | NA | 0 |
| SKCM | TCGA-ER-A3ET-06A | TCGA-ER-A3ET | SCAMP2|PLAUR | SCAMP2 | PLAUR | 15 | 19 | -1 | -1 | 23 | 5 | 5 | 0.5 | 75165540 | 44160792 | tier1 | Out-of-frame | 15373 | NA | 0 |
| SKCM | TCGA-EE-A29D-06A | TCGA-EE-A29D | SCAPER|TSPAN3 | SCAPER | TSPAN3 | 15 | 15 | -1 | -1 | 67 | 65 | 53 | 0.75 | 77134075 | 77348597 | tier1 | In-frame | 15386 | NA | 0 |
| SKCM | TCGA-ER-A19T-01A | TCGA-ER-A19T | SCYL2|ANKS1B | SCYL2 | ANKS1B | 12 | 12 | 1 | -1 | 8 | 7 | 7 | 0.8 | 100661174 | 100219167 | tier1 | NA | 15448 | validated | 0 |
| SKCM | TCGA-EE-A20F-06A | TCGA-EE-A20F | SCYL3|CLPTM1L | SCYL3 | CLPTM1L | 1 | 5 | -1 | -1 | 7 | 7 | 6 | 1.1 | 169857817 | 1325931 | tier1 | In-frame | 15452 | NA | 0 |
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