Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
| Showing page 287 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SKCM | TCGA-FS-A4F4-06A | TCGA-FS-A4F4 | PRMT3|C10orf112 | PRMT3 | C10orf112 | 11 | 10 | 1 | 1 | 5 | 2 | 2 | 0.44 | 20515800 | 19676457 | tier1 | In-frame | 13586 | NA | 0 |
| SKCM | TCGA-EB-A44Q-06A | TCGA-EB-A44Q | PSAP|ABCA1 | PSAP | ABCA1 | 10 | 9 | -1 | -1 | 2 | 1 | 1 | 3.7 | 73576058 | 107567001 | tier4 | 3UTR-CDS | 13673 | NA | 0.37929 |
| SKCM | TCGA-FS-A1ZK-06A | TCGA-FS-A1ZK | PTK2|TRAPPC9 | PTK2 | TRAPPC9 | 8 | 8 | -1 | -1 | 72 | 33 | 29 | 0.79 | 141935760 | 140744445 | tier1 | 5UTR-CDS | 13785 | non-validated | 0.38623 |
| SKCM | TCGA-EE-A3JI-06A | TCGA-EE-A3JI | PTK2B|ICA1L | PTK2B | ICA1L | 8 | 2 | 1 | -1 | 3 | 3 | 1 | 0.071 | 27277590 | 203693739 | tier4 | CDS-5UTR | 13789 | non-validated | 0.38679 |
| SKCM | TCGA-EB-A82B-01A | TCGA-EB-A82B | PTPN12|BAI1 | PTPN12 | BAI1 | 7 | 8 | 1 | 1 | 12 | 11 | 9 | 0.76 | 77266365 | 143599499 | tier1 | Out-of-frame | 13818 | NA | 0.37714 |
| SKCM | TCGA-EB-A551-01A | TCGA-EB-A551 | PTPRF|C1orf222 | PTPRF | C1orf222 | 1 | 1 | 1 | -1 | 35 | 18 | 16 | 0.11 | 44003948 | 1861775 | tier1 | NA | 13853 | NA | 0 |
| SKCM | TCGA-D3-A3C6-06A | TCGA-D3-A3C6 | PTPRG|FHIT | PTPRG | FHIT | 3 | 3 | 1 | -1 | 2 | 1 | 1 | 0.043 | 61734656 | 60522712 | tier4 | CDS-5UTR | 13860 | NA | 0.36774 |
| SKCM | TCGA-EB-A24D-01A | TCGA-EB-A24D | PTPRG|SYNPR | PTPRG | SYNPR | 3 | 3 | 1 | 1 | 40 | 26 | 23 | 3 | 61734656 | 63466508 | tier1 | Out-of-frame | 13866 | validated | 0.36134 |
| SKCM | TCGA-EB-A5KH-06A | TCGA-EB-A5KH | PTPRK|EYA4 | PTPRK | EYA4 | 6 | 6 | -1 | 1 | 3 | 2 | 2 | 0.03 | 128505577 | 133782252 | tier1 | In-frame | 13877 | NA | 0 |
| SKCM | TCGA-EE-A2MS-06A | TCGA-EE-A2MS | PTPRR|C12orf54 | PTPRR | C12orf54 | 12 | 12 | -1 | 1 | 15 | 10 | 9 | 0.38 | 71158445 | 48880471 | tier1 | In-frame | 13906 | NA | 0 |
| SKCM | TCGA-EE-A2GU-06A | TCGA-EE-A2GU | PTPRS|TMEM8A | PTPRS | TMEM8A | 19 | 16 | -1 | -1 | 14 | 22 | 19 | 0.079 | 5340675 | 434396 | tier1 | NA | 13918 | NA | 0 |
| SKCM | TCGA-EE-A20I-06A | TCGA-EE-A20I | PTPRZ1|DOCK4 | PTPRZ1 | DOCK4 | 7 | 7 | 1 | -1 | 4 | 2 | 2 | 0.67 | 121624171 | 111644186 | tier1 | In-frame | 13925 | NA | 0 |
| SKCM | TCGA-FS-A4F4-06A | TCGA-FS-A4F4 | PTPRZ1|SRRM3 | PTPRZ1 | SRRM3 | 7 | 7 | 1 | 1 | 3 | 1 | 1 | 0.087 | 121568275 | 75864346 | tier2 | CDS-5UTR | 13930 | NA | 0 |
| SKCM | TCGA-EB-A82C-01A | TCGA-EB-A82C | PUM1|HS2ST1 | PUM1 | HS2ST1 | 1 | 1 | -1 | 1 | 14 | 6 | 6 | 1.3 | 31532051 | 87538617 | tier1 | Out-of-frame | 13942 | NA | 0 |
| SKCM | TCGA-ER-A19T-01A | TCGA-ER-A19T | PXDNL|USP8 | PXDNL | USP8 | 8 | 15 | -1 | 1 | 26 | 14 | 13 | 3.5 | 52252184 | 50769473 | tier1 | Out-of-frame | 13982 | non-validated | 0 |
| SKCM | TCGA-FS-A4F4-06A | TCGA-FS-A4F4 | RAB18|C11orf41 | RAB18 | C11orf41 | 10 | 11 | 1 | 1 | 7 | 2 | 2 | 1.2 | 27798859 | 33573654 | tier1 | In-frame | 14051 | NA | 0 |
| SKCM | TCGA-D3-A8GB-06A | TCGA-D3-A8GB | RAB30|DLG2 | RAB30 | DLG2 | 11 | 11 | -1 | -1 | 2 | 1 | 1 | 0.002 | 82782733 | 83497835 | tier2 | 5UTR-CDS | 14073 | NA | 0 |
| SKCM | TCGA-GN-A26D-06A | TCGA-GN-A26D | RASSF3|ITGA7 | RASSF3 | ITGA7 | 12 | 12 | 1 | -1 | 1874 | 1526 | 1447 | 1.9 | 65004523 | 56079072 | tier1 | In-frame | 14380 | NA | 0 |
| SKCM | TCGA-D3-A3BZ-06A | TCGA-D3-A3BZ | RBM19|PTPRQ | RBM19 | PTPRQ | 12 | 12 | -1 | 1 | 79 | 64 | 58 | 0.33 | 114352774 | 80981908 | tier1 | Out-of-frame | 14451 | NA | 0 |
| SKCM | TCGA-DA-A3F3-06A | TCGA-DA-A3F3 | RECK|ACER3 | RECK | ACER3 | 9 | 11 | 1 | 1 | 50 | 37 | 32 | 0.03 | 36052320 | 76687333 | tier1 | In-frame | 14527 | non-validated | 0 |
|
Showing page 287 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.