Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SKCM | TCGA-EE-A2GJ-06A | TCGA-EE-A2GJ | LCP2|SLC34A1 | LCP2 | SLC34A1 | 5 | 5 | -1 | 1 | 34 | 39 | 33 | 0.43 | 169701305 | 176820695 | tier1 | In-frame | 9261 | NA | 0.37495 |
| SKCM | TCGA-WE-A8ZT-06A | TCGA-WE-A8ZT | LDLR|DNM2 | LDLR | DNM2 | 19 | 19 | 1 | 1 | 13 | 8 | 7 | 0.087 | 11231198 | 10922940 | tier1 | Out-of-frame | 9269 | NA | 0.38409 |
| SKCM | TCGA-FS-A4F4-06A | TCGA-FS-A4F4 | LDLRAD3|PHF21A | LDLRAD3 | PHF21A | 11 | 11 | 1 | -1 | 8 | 1 | 1 | 0.023 | 36057799 | 46113774 | tier3 | CDS-5UTR | 9279 | NA | 0.36857 |
| SKCM | TCGA-FR-A726-01A | TCGA-FR-A726 | LDLRAD3|TRIM44 | LDLRAD3 | TRIM44 | 11 | 11 | 1 | 1 | 88 | 51 | 48 | 0.12 | 36057799 | 35827908 | tier1 | Out-of-frame | 9283 | NA | 0.34425 |
| SKCM | TCGA-GN-A8LL-06A | TCGA-GN-A8LL | LDLRAD3|VWA5B2 | LDLRAD3 | VWA5B2 | 11 | 3 | 1 | 1 | 6 | 17 | 15 | 0.046 | 36120011 | 183952419 | tier1 | In-frame | 9284 | NA | 0.33868 |
| SKCM | TCGA-ER-A19J-06A | TCGA-ER-A19J | LMAN2|DOCK2 | LMAN2 | DOCK2 | 5 | 5 | -1 | 1 | 4 | 5 | 5 | 1.4 | 176778174 | 169174400 | tier1 | Out-of-frame | 9376 | validated | 0.36424 |
| SKCM | TCGA-EE-A3AG-06A | TCGA-EE-A3AG | LMBR1|KIAA0825 | LMBR1 | KIAA0825 | 7 | 5 | -1 | -1 | 7 | 2 | 2 | 0.074 | 156589083 | 93872832 | tier1 | CDS-5UTR | 9383 | NA | 0.34228 |
| SKCM | TCGA-EE-A20I-06A | TCGA-EE-A20I | LMBRD2|CTNND2 | LMBRD2 | CTNND2 | 5 | 5 | -1 | -1 | 23 | 32 | 29 | 0.46 | 36108636 | 11365002 | tier1 | In-frame | 9397 | NA | 0.37965 |
| SKCM | TCGA-D3-A8GN-06A | TCGA-D3-A8GN | LNPEP|FLT4 | LNPEP | FLT4 | 5 | 5 | 1 | -1 | 5 | 11 | 10 | 2.7 | 96271878 | 180048904 | tier1 | In-frame | 9414 | NA | 0.38841 |
| SKCM | TCGA-GF-A769-01A | TCGA-GF-A769 | LRP1|TMEM194A | LRP1 | TMEM194A | 12 | 12 | 1 | -1 | 25 | 7 | 6 | 3 | 57537581 | 57466695 | tier1 | In-frame | 9510 | NA | 0.37731 |
| SKCM | TCGA-D3-A3MO-06A | TCGA-D3-A3MO | LRP12|RALGPS1 | LRP12 | RALGPS1 | 8 | 9 | -1 | 1 | 17 | 8 | 8 | 0.93 | 105601047 | 129724504 | tier1 | CDS-5UTR | 9517 | non-validated | 0.36912 |
| SKCM | TCGA-EB-A57M-01A | TCGA-EB-A57M | LRP5|UVRAG | LRP5 | UVRAG | 11 | 11 | 1 | 1 | 2 | 3 | 3 | 2.6 | 68207384 | 75776754 | tier3 | Out-of-frame | 9536 | NA | 0.37063 |
| SKCM | TCGA-FS-A1Z4-06A | TCGA-FS-A1Z4 | LRRC68|CLPTM1 | LRRC68 | CLPTM1 | 19 | 19 | 1 | 1 | 3 | 1 | 1 | 0.28 | 45596785 | 45465220 | tier4 | Out-of-frame | 9588 | NA | 0.35528 |
| SKCM | TCGA-FR-A7UA-06A | TCGA-FR-A7UA | LRRC8D|PALMD | LRRC8D | PALMD | 1 | 1 | 1 | 1 | 2 | 5 | 5 | 0.029 | 90309341 | 100127875 | tier3 | 5UTR-CDS | 9604 | NA | 0.34835 |
| SKCM | TCGA-FS-A1ZJ-06A | TCGA-FS-A1ZJ | LSAMP|COL4A5 | LSAMP | COL4A5 | 3 | X | -1 | 1 | 9 | 4 | 4 | 0.11 | 115738362 | 107811989 | tier1 | Out-of-frame | 9625 | NA | 0.36712 |
| SKCM | TCGA-YD-A9TA-06A | TCGA-YD-A9TA | LSAMP|IGSF11 | LSAMP | IGSF11 | 3 | 3 | -1 | -1 | 2 | 2 | 2 | 0.063 | 117716029 | 118624565 | tier2 | In-frame | 9627 | NA | 0.35037 |
| SKCM | TCGA-D3-A1Q3-06A | TCGA-D3-A1Q3 | LYST|SLC3A2 | LYST | SLC3A2 | 1 | 11 | -1 | 1 | 2 | 49 | 33 | 0.33 | 236046487 | 62643221 | tier4 | 5UTR-CDS | 9713 | NA | 0.37063 |
| SKCM | TCGA-W3-AA1V-06B | TCGA-W3-AA1V | MARCH3|OPCML | MARCH3 | OPCML | 5 | 11 | -1 | -1 | 5 | 25 | 22 | 0.084 | 126366042 | 132812905 | tier1 | 5UTR-5UTR | 9982 | NA | 0 |
| SKCM | TCGA-GN-A26D-06A | TCGA-GN-A26D | MARK2|BATF2 | MARK2 | BATF2 | 11 | 11 | 1 | -1 | 38 | 24 | 21 | 0.36 | 63607032 | 64762021 | tier1 | In-frame | 9995 | NA | 0.388 |
| SKCM | TCGA-ER-A3EV-06A | TCGA-ER-A3EV | METTL5|MERTK | METTL5 | MERTK | 2 | 2 | -1 | 1 | 3 | 6 | 4 | 0.67 | 170676071 | 112785928 | tier1 | Out-of-frame | 10279 | NA | 0.38033 |
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