Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SKCM | TCGA-GN-A26D-06A | TCGA-GN-A26D | HMGA2|GABRA3 | HMGA2 | GABRA3 | 12 | X | 1 | -1 | 22 | 12 | 12 | 0.31 | 66232349 | 151393317 | tier1 | Out-of-frame | 7859 | NA | 0.36867 |
| SKCM | TCGA-EB-A5KH-06A | TCGA-EB-A5KH | HMGXB3|PAM | HMGXB3 | PAM | 5 | 5 | 1 | 1 | 12 | 10 | 9 | 0.024 | 149386210 | 102201527 | tier1 | CDS-5UTR | 7872 | NA | 0.3529 |
| SKCM | TCGA-ER-A2NE-06A | TCGA-ER-A2NE | HOXB6|EPHA5 | HOXB6 | EPHA5 | 17 | 4 | -1 | -1 | 5 | 3 | 3 | 0.29 | 46681842 | 66509145 | tier1 | 5UTR-CDS | 7939 | NA | 0.3767 |
| SKCM | TCGA-D9-A6EA-06A | TCGA-D9-A6EA | HS6ST3|EFNA5 | HS6ST3 | EFNA5 | 13 | 5 | 1 | -1 | 6 | 2 | 2 | 3.8 | 96743823 | 106763210 | tier1 | In-frame | 7969 | NA | 0.35898 |
| SKCM | TCGA-EE-A29G-06A | TCGA-EE-A29G | IGF2R|QKI | IGF2R | QKI | 6 | 6 | 1 | 1 | 9 | 2 | 1 | 3.1 | 160511135 | 163956014 | tier2 | Out-of-frame | 8113 | NA | 0.3659 |
| SKCM | TCGA-ER-A2NG-06A | TCGA-ER-A2NG | IL12RB2|SDC3 | IL12RB2 | SDC3 | 1 | 1 | 1 | -1 | 15 | 10 | 9 | 0.92 | 67816772 | 31350012 | tier1 | In-frame | 8158 | NA | 0.37023 |
| SKCM | TCGA-FR-A44A-06A | TCGA-FR-A44A | IL17RC|TTLL3 | IL17RC | TTLL3 | 3 | 3 | 1 | 1 | 3 | 5 | 5 | 0.13 | 9970314 | 9857758 | tier1 | CDS-5UTR | 8164 | NA | 0.34051 |
| SKCM | TCGA-DA-A3F5-06A | TCGA-DA-A3F5 | IL27RA|RLN3 | IL27RA | RLN3 | 19 | 19 | 1 | 1 | 43 | 27 | 24 | 0.019 | 14143315 | 14141522 | tier1 | Out-of-frame | 8188 | non-validated | 0.36098 |
| SKCM | TCGA-BF-A1Q0-01A | TCGA-BF-A1Q0 | IL4R|NSMCE1 | IL4R | NSMCE1 | 16 | 16 | 1 | -1 | 156 | 122 | 114 | 1.6 | 27325341 | 27246620 | tier1 | 5UTR-CDS | 8200 | NA | 0.37656 |
| SKCM | TCGA-FS-A1ZD-06A | TCGA-FS-A1ZD | INPP5F|GRK5 | INPP5F | GRK5 | 10 | 10 | 1 | 1 | 31 | 23 | 23 | 0.47 | 121485871 | 121140327 | tier1 | In-frame | 8253 | validated | 0.3817 |
| SKCM | TCGA-D3-A3CF-06A | TCGA-D3-A3CF | ITSN2|MYO10 | ITSN2 | MYO10 | 2 | 5 | -1 | -1 | 16 | 31 | 22 | 0.15 | 24583173 | 16818276 | tier1 | 5UTR-CDS | 8465 | NA | 0.37758 |
| SKCM | TCGA-EB-A6QY-01A | TCGA-EB-A6QY | KCNQ5|ALK | KCNQ5 | ALK | 6 | 2 | 1 | -1 | 7 | 5 | 3 | 0.035 | 73332315 | 29498362 | tier1 | In-frame | 8606 | NA | 0.38637 |
| SKCM | TCGA-EE-A2MR-06A | TCGA-EE-A2MR | KHDRBS3|ANXA13 | KHDRBS3 | ANXA13 | 8 | 8 | 1 | -1 | 3 | 2 | 2 | 100 | 136470197 | 124714976 | tier1 | In-frame | 8721 | NA | 0.35941 |
| SKCM | TCGA-EE-A2MS-06A | TCGA-EE-A2MS | KIAA0317|DPEP1 | KIAA0317 | DPEP1 | 14 | 16 | -1 | 1 | 6 | 1 | 1 | 4.1 | 75136352 | 89702316 | tier2 | Out-of-frame | 8772 | NA | 0.35049 |
| SKCM | TCGA-FR-A3YN-06A | TCGA-FR-A3YN | KIRREL|CD48 | KIRREL | CD48 | 1 | 1 | 1 | -1 | 7 | 2 | 2 | 0.003 | 157963518 | 160654979 | tier1 | In-frame | 9023 | NA | 0.37412 |
| SKCM | TCGA-DA-A1IA-06A | TCGA-DA-A1IA | KIRREL|DDR2 | KIRREL | DDR2 | 1 | 1 | 1 | 1 | 2 | 8 | 1 | 0.22 | 157963518 | 162625001 | tier3 | CDS-5UTR | 9024 | NA | 0.38506 |
| SKCM | TCGA-FS-A1ZG-06A | TCGA-FS-A1ZG | KIT|FAR1 | KIT | FAR1 | 4 | 11 | 1 | 1 | 2 | 1 | 1 | 0.088 | 55606881 | 13744912 | tier3 | NA | 9027 | NA | 0.38865 |
| SKCM | TCGA-EB-A44O-01A | TCGA-EB-A44O | KIT|UGT2B7 | KIT | UGT2B7 | 4 | 4 | 1 | 1 | 10 | 4 | 4 | 0.35 | 55524248 | 69955190 | tier1 | NA | 9030 | NA | 0.38644 |
| SKCM | TCGA-D3-A3CF-06A | TCGA-D3-A3CF | LBH|FLT4 | LBH | FLT4 | 2 | 5 | 1 | -1 | 148 | 142 | 124 | 0.05 | 30457373 | 180058778 | tier1 | Out-of-frame | 9249 | NA | 0.38391 |
| SKCM | TCGA-EB-A550-01A | TCGA-EB-A550 | LCLAT1|EPHA3 | LCLAT1 | EPHA3 | 2 | 3 | 1 | 1 | 3 | 1 | 1 | 0.086 | 30756180 | 89390066 | tier2 | In-frame | 9252 | NA | 0.38063 |
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