Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SKCM | TCGA-ER-A19T-01A | TCGA-ER-A19T | FCHSD2|ATP6V1H | FCHSD2 | ATP6V1H | 11 | 8 | -1 | -1 | 31 | 3 | 2 | 1.3 | 72851076 | 54682303 | tier1 | In-frame | 6387 | non-validated | 0.36701 |
| SKCM | TCGA-ER-A19W-06A | TCGA-ER-A19W | FCHSD2|TPCN2 | FCHSD2 | TPCN2 | 11 | 11 | -1 | 1 | 37 | 31 | 27 | 0.76 | 72613588 | 68825046 | tier1 | In-frame | 6408 | NA | 0.36895 |
| SKCM | TCGA-EB-A82C-01A | TCGA-EB-A82C | FER|FBXL17 | FER | FBXL17 | 5 | 5 | 1 | -1 | 14 | 3 | 2 | 2.2 | 108233549 | 107197561 | tier1 | In-frame | 6420 | NA | 0.38362 |
| SKCM | TCGA-EB-A431-01A | TCGA-EB-A431 | FGFR1OP|ABCC4 | FGFR1OP | ABCC4 | 6 | 13 | 1 | -1 | 9 | 16 | 12 | 0.81 | 167417299 | 95847191 | tier1 | In-frame | 6456 | NA | 0.35277 |
| SKCM | TCGA-EE-A2MM-06A | TCGA-EE-A2MM | FGFR1OP2|TEC | FGFR1OP2 | TEC | 12 | 4 | 1 | -1 | 10 | 4 | 4 | 1.3 | 27091643 | 48158751 | tier1 | 5UTR-CDS | 6459 | NA | 0.33933 |
| SKCM | TCGA-EB-A5UL-06A | TCGA-EB-A5UL | FNDC3B|SUCNR1 | FNDC3B | SUCNR1 | 3 | 3 | 1 | 1 | 4 | 3 | 3 | 1.4 | 171851336 | 151597640 | tier1 | CDS-5UTR | 6616 | NA | 0.35399 |
| SKCM | TCGA-EB-A44R-06A | TCGA-EB-A44R | FOXK1|THSD7A | FOXK1 | THSD7A | 7 | 7 | 1 | -1 | 24 | 10 | 10 | 0.008 | 4780654 | 11422243 | tier1 | Out-of-frame | 6650 | NA | 0.35552 |
| SKCM | TCGA-EE-A184-06A | TCGA-EE-A184 | FREM2|SNAP29 | FREM2 | SNAP29 | 13 | 22 | 1 | 1 | 149 | 113 | 103 | 0.19 | 39271924 | 21241967 | tier1 | In-frame | 6714 | NA | 0.36667 |
| SKCM | TCGA-ER-A196-01A | TCGA-ER-A196 | FRMD4A|APBB1IP | FRMD4A | APBB1IP | 10 | 10 | -1 | 1 | 51 | 20 | 20 | 0.68 | 13716911 | 26800676 | tier1 | In-frame | 6718 | NA | 0.3721 |
| SKCM | TCGA-EE-A2MS-06A | TCGA-EE-A2MS | FRMD4A|PLXDC2 | FRMD4A | PLXDC2 | 10 | 10 | -1 | 1 | 4 | 1 | 1 | 0.74 | 14050059 | 20465928 | tier2 | Out-of-frame | 6722 | NA | 0.34784 |
| SKCM | TCGA-WE-A8ZR-06A | TCGA-WE-A8ZR | FRMD4B|ABCA5 | FRMD4B | ABCA5 | 3 | 17 | -1 | -1 | 13 | 4 | 3 | 0.012 | 69336903 | 67252424 | tier1 | Out-of-frame | 6724 | NA | 0.3514 |
| SKCM | TCGA-GN-A26D-06A | TCGA-GN-A26D | FRS2|TBC1D30 | FRS2 | TBC1D30 | 12 | 12 | 1 | 1 | 30 | 4 | 4 | 0.52 | 69864310 | 65258448 | tier1 | 5UTR-CDS | 6788 | NA | 0.37711 |
| SKCM | TCGA-YD-A9TA-06A | TCGA-YD-A9TA | FZD6|SDCCAG8 | FZD6 | SDCCAG8 | 8 | 1 | 1 | 1 | 5 | 2 | 2 | 4.2 | 104312512 | 243449574 | tier1 | In-frame | 6862 | NA | 0.35023 |
| SKCM | TCGA-GN-A8LN-01A | TCGA-GN-A8LN | FZR1|C19orf28 | FZR1 | C19orf28 | 19 | 19 | 1 | -1 | 4 | 22 | 16 | 0.084 | 3506472 | 3551192 | tier1 | 5UTR-CDS | 6863 | NA | 0 |
| SKCM | TCGA-ER-A19T-01A | TCGA-ER-A19T | GAB2|FGF7 | GAB2 | FGF7 | 11 | 15 | -1 | 1 | 124 | 105 | 100 | 0.34 | 77961203 | 49716229 | tier1 | CDS-5UTR | 6882 | non-validated | 0.38854 |
| SKCM | TCGA-EB-A5SH-06A | TCGA-EB-A5SH | GAB2|NUDC | GAB2 | NUDC | 11 | 1 | -1 | 1 | 127 | 146 | 140 | 1.4 | 78128692 | 27250580 | tier1 | In-frame | 6885 | NA | 0.38827 |
| SKCM | TCGA-YG-AA3P-06A | TCGA-YG-AA3P | GAB2|PTPRT | GAB2 | PTPRT | 11 | 20 | -1 | -1 | 7 | 6 | 6 | 0.8 | 78128692 | 40828028 | tier1 | Out-of-frame | 6888 | NA | 0.38759 |
| SKCM | TCGA-EB-A6L9-06A | TCGA-EB-A6L9 | GAB2|RP11-111M22.2 | GAB2 | RP11-111M22.2 | 11 | 11 | -1 | 1 | 8 | 12 | 12 | 0.096 | 78128692 | 76114704 | tier1 | Out-of-frame | 6889 | NA | 0.3778 |
| SKCM | TCGA-ER-A19T-06A | TCGA-ER-A19T | GAB2|TRIP12 | GAB2 | TRIP12 | 11 | 2 | -1 | -1 | 2 | 3 | 3 | 0.41 | 77926343 | 230662547 | tier3 | 3UTR-CDS | 6891 | non-validated | 0.3884 |
| SKCM | TCGA-GN-A26D-06A | TCGA-GN-A26D | GABRA3|SARNP | GABRA3 | SARNP | X | 12 | -1 | -1 | 36 | 29 | 28 | 1.6 | 151393235 | 56146624 | tier1 | CDS-3UTR | 6901 | NA | 0.33886 |
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