Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SKCM | TCGA-EB-A550-01A | TCGA-EB-A550 | EHD4|GPR176 | EHD4 | GPR176 | 15 | 15 | -1 | -1 | 4 | 2 | 2 | 0.053 | 42264457 | 40099459 | tier1 | Out-of-frame | 5405 | NA | 0.35787 |
| SKCM | TCGA-EB-A4XL-01A | TCGA-EB-A4XL | EPB41|ITPR1 | EPB41 | ITPR1 | 1 | 3 | 1 | 1 | 8 | 7 | 5 | 0.18 | 29435949 | 4774772 | tier1 | In-frame | 5630 | NA | 0.38156 |
| SKCM | TCGA-EB-A551-01A | TCGA-EB-A551 | EPRS|USH2A | EPRS | USH2A | 1 | 1 | -1 | -1 | 7 | 1 | 1 | 0.081 | 220213527 | 215853718 | tier2 | Out-of-frame | 5695 | NA | 0.37313 |
| SKCM | TCGA-EB-A82C-01A | TCGA-EB-A82C | EPS15|C1orf159 | EPS15 | C1orf159 | 1 | 1 | -1 | -1 | 13 | 9 | 6 | 0.14 | 51929345 | 1027483 | tier1 | CDS-5UTR | 5696 | NA | 0 |
| SKCM | TCGA-D3-A1Q5-06A | TCGA-D3-A1Q5 | ERBB2IP|ARL15 | ERBB2IP | ARL15 | 5 | 5 | 1 | -1 | 22 | 12 | 9 | 0.77 | 65310553 | 53182543 | tier1 | Out-of-frame | 5732 | non-validated | 0.38407 |
| SKCM | TCGA-D3-A2JH-06A | TCGA-D3-A2JH | ERBB2IP|TMEM232 | ERBB2IP | TMEM232 | 5 | 5 | 1 | -1 | 62 | 30 | 24 | 0.26 | 65350779 | 109760617 | tier1 | Out-of-frame | 5738 | NA | 0.37735 |
| SKCM | TCGA-D3-A1Q1-06A | TCGA-D3-A1Q1 | ERBB3|RPL30 | ERBB3 | RPL30 | 12 | 8 | 1 | -1 | 3 | 1 | 1 | 0.068 | 56497283 | 99058697 | tier2 | NA | 5742 | non-validated | 0.38638 |
| SKCM | TCGA-D3-A1Q9-06A | TCGA-D3-A1Q9 | ERC1|METTL4 | ERC1 | METTL4 | 12 | 18 | 1 | -1 | 148 | 144 | 136 | 0.1 | 1346070 | 2567653 | tier1 | CDS-5UTR | 5747 | NA | 0.35767 |
| SKCM | TCGA-EE-A2MS-06A | TCGA-EE-A2MS | ERGIC1|GPR98 | ERGIC1 | GPR98 | 5 | 5 | 1 | 1 | 50 | 38 | 36 | 0.78 | 172359539 | 90083888 | tier1 | In-frame | 5773 | NA | 0.34154 |
| SKCM | TCGA-ER-A2NE-06A | TCGA-ER-A2NE | ERICH1|PTPRR | ERICH1 | PTPRR | 8 | 12 | -1 | -1 | 6 | 2 | 2 | 0.033 | 642478 | 71286757 | tier1 | In-frame | 5781 | NA | 0.3723 |
| SKCM | TCGA-W3-AA1V-06B | TCGA-W3-AA1V | ETV6|ITLN1 | ETV6 | ITLN1 | 12 | 1 | 1 | -1 | 110 | 72 | 69 | 0.092 | 11803094 | 160854673 | tier1 | CDS-5UTR | 5867 | NA | 0.36949 |
| SKCM | TCGA-EB-A51B-01A | TCGA-EB-A51B | ETV6|NTRK3 | ETV6 | NTRK3 | 12 | 15 | 1 | -1 | 18 | 17 | 14 | 5.5 | 12022903 | 88483984 | tier1 | In-frame | 5875 | NA | 0.39062 |
| SKCM | TCGA-ER-A3EV-06A | TCGA-ER-A3EV | EXOC2|MDGA1 | EXOC2 | MDGA1 | 6 | 6 | -1 | -1 | 3 | 2 | 1 | 0.49 | 693019 | 37612425 | tier3 | 5UTR-CDS | 5896 | NA | 0.36531 |
| SKCM | TCGA-D9-A4Z6-01A | TCGA-D9-A4Z6 | FAM126A|TRA2A | FAM126A | TRA2A | 7 | 7 | -1 | -1 | 44 | 29 | 25 | 1.4 | 23023563 | 23547154 | tier1 | In-frame | 6029 | NA | 0.35824 |
| SKCM | TCGA-FS-A1ZG-06A | TCGA-FS-A1ZG | FAM134B|ANKH | FAM134B | ANKH | 5 | 5 | -1 | -1 | 3 | 10 | 9 | 0.27 | 16565872 | 14769300 | tier1 | Out-of-frame | 6045 | NA | 0.34012 |
| SKCM | TCGA-D3-A3CF-06A | TCGA-D3-A3CF | FAM134B|SNTG2 | FAM134B | SNTG2 | 5 | 2 | -1 | 1 | 8 | 7 | 7 | 0.76 | 16565872 | 1312266 | tier1 | Out-of-frame | 6047 | NA | 0.35765 |
| SKCM | TCGA-Z2-AA3V-06A | TCGA-Z2-AA3V | FAM38A|CBFA2T3 | FAM38A | CBFA2T3 | 16 | 16 | -1 | -1 | 2 | 1 | 1 | 0.097 | 88851309 | 88958893 | tier4 | In-frame | 6167 | NA | 0.36329 |
| SKCM | TCGA-EE-A2GB-06A | TCGA-EE-A2GB | FAM59A|PTPRM | FAM59A | PTPRM | 18 | 18 | -1 | 1 | 30 | 20 | 19 | 0.11 | 29972858 | 7888104 | tier1 | In-frame | 6194 | NA | 0.37361 |
| SKCM | TCGA-ER-A19T-01A | TCGA-ER-A19T | FBL|RYR1 | FBL | RYR1 | 19 | 19 | -1 | 1 | 49 | 41 | 41 | 0.63 | 40336931 | 39055599 | tier1 | Out-of-frame | 6280 | non-validated | 0.37307 |
| SKCM | TCGA-FW-A3I3-06A | TCGA-FW-A3I3 | FBXO33|SERINC5 | FBXO33 | SERINC5 | 14 | 5 | -1 | -1 | 16 | 11 | 10 | 3.2 | 39900768 | 79470870 | tier1 | Out-of-frame | 6347 | NA | 0.34196 |
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