Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SKCM | TCGA-EB-A42Z-01A | TCGA-EB-A42Z | CYTH3|GRID1 | CYTH3 | GRID1 | 7 | 10 | -1 | -1 | 64 | 38 | 32 | 0.006 | 6312105 | 87966405 | tier1 | In-frame | 4516 | NA | 0.36447 |
| SKCM | TCGA-D3-A8GM-06A | TCGA-D3-A8GM | DAAM1|PRKCH | DAAM1 | PRKCH | 14 | 14 | 1 | 1 | 34 | 16 | 14 | 0.21 | 59758024 | 61995793 | tier1 | Out-of-frame | 4524 | NA | 0.38575 |
| SKCM | TCGA-FS-A1ZG-06A | TCGA-FS-A1ZG | DAP|SEMA5A | DAP | SEMA5A | 5 | 5 | -1 | -1 | 33 | 16 | 15 | 3.4 | 10748287 | 9380135 | tier1 | CDS-5UTR | 4545 | NA | 0.36463 |
| SKCM | TCGA-D3-A8GN-06A | TCGA-D3-A8GN | DCAKD|SMAP1 | DCAKD | SMAP1 | 17 | 6 | -1 | 1 | 14 | 8 | 7 | 0.072 | 43138256 | 71464683 | tier1 | 5UTR-CDS | 4591 | NA | 0.35639 |
| SKCM | TCGA-W3-A825-06A | TCGA-W3-A825 | DCHS2|C4orf32 | DCHS2 | C4orf32 | 4 | 4 | -1 | 1 | 6 | 2 | 1 | 0.25 | 155410456 | 113107849 | tier2 | In-frame | 4598 | NA | 0 |
| SKCM | TCGA-ER-A19H-06A | TCGA-ER-A19H | DCLK2|UST | DCLK2 | UST | 4 | 6 | 1 | 1 | 13 | 15 | 15 | 0.64 | 151000600 | 149394969 | tier1 | In-frame | 4605 | NA | 0.35027 |
| SKCM | TCGA-D3-A1Q9-06A | TCGA-D3-A1Q9 | DCUN1D4|PTPRT | DCUN1D4 | PTPRT | 4 | 20 | 1 | -1 | 3 | 1 | 1 | 0.046 | 52777340 | 41101202 | tier2 | Out-of-frame | 4621 | NA | 0.3513 |
| SKCM | TCGA-EB-A430-01A | TCGA-EB-A430 | DDR2|FMO4 | DDR2 | FMO4 | 1 | 1 | 1 | 1 | 66 | 25 | 23 | 3.1 | 162625164 | 171293277 | tier1 | 5UTR-CDS | 4642 | NA | 0.38229 |
| SKCM | TCGA-EB-A5KH-06A | TCGA-EB-A5KH | DGCR8|ITGA2 | DGCR8 | ITGA2 | 22 | 5 | 1 | 1 | 2 | 1 | 1 | 0.36 | 20080430 | 52385776 | tier2 | Out-of-frame | 4745 | NA | 0.36866 |
| SKCM | TCGA-EE-A3AE-06A | TCGA-EE-A3AE | DLG4|BBS2 | DLG4 | BBS2 | 17 | 16 | -1 | -1 | 2 | 1 | 1 | 1.5 | 7106222 | 56548592 | tier2 | Out-of-frame | 4884 | NA | 0.37208 |
| SKCM | TCGA-YD-A89C-06A | TCGA-YD-A89C | DNAH14|ARF1 | DNAH14 | ARF1 | 1 | 1 | 1 | 1 | 314 | 132 | 94 | 0.28 | 225117537 | 228284779 | tier1 | CDS-5UTR | 4921 | NA | 0.37121 |
| SKCM | TCGA-WE-A8K1-06A | TCGA-WE-A8K1 | DNM2|C19orf66 | DNM2 | C19orf66 | 19 | 19 | 1 | 1 | 4 | 2 | 2 | 0.12 | 10829079 | 10197605 | tier1 | Out-of-frame | 4971 | NA | 0 |
| SKCM | TCGA-EB-A550-01A | TCGA-EB-A550 | DNM2|FDX1L | DNM2 | FDX1L | 19 | 19 | 1 | -1 | 7 | 8 | 8 | 0.009 | 10829079 | 10419226 | tier1 | CDS-3UTR | 4973 | NA | 0.37736 |
| SKCM | TCGA-EB-A550-01A | TCGA-EB-A550 | DNM2|ZGLP1 | DNM2 | ZGLP1 | 19 | 19 | 1 | -1 | 11 | 2 | 1 | 0.038 | 10942579 | 10420556 | tier2 | 3UTR-5UTR | 4993 | NA | 0.37549 |
| SKCM | TCGA-EB-A4IQ-01A | TCGA-EB-A4IQ | DPY19L3|GPR68 | DPY19L3 | GPR68 | 19 | 14 | 1 | -1 | 5 | 1 | 1 | 2.1 | 32930816 | 91701523 | tier2 | CDS-5UTR | 5092 | NA | 0.34932 |
| SKCM | TCGA-ER-A196-01A | TCGA-ER-A196 | DYM|TMC7 | DYM | TMC7 | 18 | 16 | -1 | 1 | 12 | 12 | 12 | 1.6 | 46783380 | 19051611 | tier1 | Out-of-frame | 5200 | NA | 0.3412 |
| SKCM | TCGA-FS-A4F9-06A | TCGA-FS-A4F9 | DYX1C1|LSAMP | DYX1C1 | LSAMP | 15 | 3 | -1 | -1 | 4 | 1 | 1 | 0.01 | 55700419 | 116163802 | tier3 | 5UTR-CDS | 5238 | NA | 0.35627 |
| SKCM | TCGA-EB-A42Z-01A | TCGA-EB-A42Z | ECE1|FAM183A | ECE1 | FAM183A | 1 | 1 | -1 | 1 | 2 | 2 | 2 | 0.28 | 21671869 | 43616432 | tier2 | Out-of-frame | 5258 | NA | 0.34971 |
| SKCM | TCGA-EB-A42Z-01A | TCGA-EB-A42Z | ECE1|PLA2G5 | ECE1 | PLA2G5 | 1 | 1 | -1 | 1 | 12 | 7 | 2 | 0.017 | 21616563 | 20411314 | tier1 | CDS-5UTR | 5259 | NA | 0.35008 |
| SKCM | TCGA-EE-A29L-06A | TCGA-EE-A29L | EFHA2|TGFBR3 | EFHA2 | TGFBR3 | 8 | 1 | 1 | -1 | 29 | 10 | 8 | 0.075 | 16885169 | 92200516 | tier1 | In-frame | 5343 | NA | 0.37153 |
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