Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SKCM | TCGA-WE-A8ZN-06A | TCGA-WE-A8ZN | CHKA|PAK1 | CHKA | PAK1 | 11 | 11 | -1 | -1 | 10 | 4 | 2 | 0.34 | 67864486 | 77085410 | tier2 | Out-of-frame | 3686 | NA | 0.37382 |
| SKCM | TCGA-ER-A19L-06A | TCGA-ER-A19L | CLCN6|RAF1 | CLCN6 | RAF1 | 1 | 3 | 1 | -1 | 69 | 65 | 62 | 0.66 | 11867247 | 12641914 | tier1 | In-frame | 3768 | validated | 0.3881 |
| SKCM | TCGA-EE-A20F-06A | TCGA-EE-A20F | CLPTM1L|VARS | CLPTM1L | VARS | 5 | 6 | -1 | -1 | 504 | 456 | 438 | 0.11 | 1338019 | 31763027 | tier1 | CDS-5UTR | 3848 | NA | 0.3593 |
| SKCM | TCGA-ER-A42H-01A | TCGA-ER-A42H | CMTM7|CLDN11 | CMTM7 | CLDN11 | 3 | 3 | 1 | 1 | 9 | 5 | 4 | 0.55 | 32433557 | 170425833 | tier1 | Out-of-frame | 3895 | NA | 0.34282 |
| SKCM | TCGA-EB-A551-01A | TCGA-EB-A551 | CNN3|CACHD1 | CNN3 | CACHD1 | 1 | 1 | -1 | 1 | 2 | 1 | 1 | 0.12 | 95392394 | 65047839 | tier2 | In-frame | 3917 | NA | 0.35763 |
| SKCM | TCGA-ER-A197-06A | TCGA-ER-A197 | CNST|LNX1 | CNST | LNX1 | 1 | 4 | 1 | -1 | 9 | 5 | 5 | 0.2 | 246755243 | 54373636 | tier1 | In-frame | 3944 | NA | 0.37019 |
| SKCM | TCGA-EE-A2GR-06A | TCGA-EE-A2GR | CNTN5|ME3 | CNTN5 | ME3 | 11 | 11 | 1 | -1 | 3 | 2 | 2 | 0.15 | 100126650 | 86270865 | tier1 | Out-of-frame | 3953 | NA | 0.35388 |
| SKCM | TCGA-FS-A1ZK-06A | TCGA-FS-A1ZK | COMMD9|CD59 | COMMD9 | CD59 | 11 | 11 | -1 | -1 | 97 | 26 | 26 | 100 | 36300027 | 33720060 | tier1 | Out-of-frame | 4057 | validated | 0.36656 |
| SKCM | TCGA-EE-A184-06A | TCGA-EE-A184 | COMT|ZDHHC11 | COMT | ZDHHC11 | 22 | 5 | 1 | -1 | 34 | 63 | 58 | 0.018 | 19929420 | 825366 | tier1 | 5UTR-CDS | 4060 | NA | 0.35445 |
| SKCM | TCGA-YD-A89C-06A | TCGA-YD-A89C | CORO2B|SLC22A23 | CORO2B | SLC22A23 | 15 | 6 | 1 | -1 | 12 | 17 | 15 | 3 | 68871616 | 3416089 | tier2 | In-frame | 4082 | NA | 0.36262 |
| SKCM | TCGA-EB-A3HV-01A | TCGA-EB-A3HV | CORO6|SLC20A2 | CORO6 | SLC20A2 | 17 | 8 | -1 | -1 | 4 | 3 | 3 | 0.097 | 27945808 | 42275485 | tier1 | In-frame | 4083 | NA | 0.35911 |
| SKCM | TCGA-EB-A4XL-01A | TCGA-EB-A4XL | CRISPLD2|MPZL2 | CRISPLD2 | MPZL2 | 16 | 11 | 1 | -1 | 26 | 19 | 16 | 1.5 | 84922969 | 118125948 | tier1 | CDS-3UTR | 4229 | NA | 0.34548 |
| SKCM | TCGA-FS-A1ZJ-06A | TCGA-FS-A1ZJ | CRLF3|CRHR1 | CRLF3 | CRHR1 | 17 | 17 | -1 | 1 | 5 | 6 | 5 | 0.96 | 29151541 | 43893829 | tier1 | CDS-5UTR | 4235 | NA | 0.36769 |
| SKCM | TCGA-EE-A2MS-06A | TCGA-EE-A2MS | CRTC3|IQGAP1 | CRTC3 | IQGAP1 | 15 | 15 | 1 | 1 | 14 | 13 | 3 | 0.38 | 91083369 | 90982564 | tier1 | Out-of-frame | 4247 | NA | 0.38405 |
| SKCM | TCGA-EE-A2MR-06A | TCGA-EE-A2MR | CSK|C15orf27 | CSK | C15orf27 | 15 | 15 | 1 | 1 | 22 | 13 | 10 | 0.25 | 75075061 | 76426509 | tier1 | 5UTR-5UTR | 4269 | NA | 0 |
| SKCM | TCGA-ER-A19M-06A | TCGA-ER-A19M | CTD-2006C1.2|PKN1 | CTD-2006C1.2 | PKN1 | 19 | 19 | 1 | 1 | 16 | 9 | 9 | 1.7 | 12098638 | 14551955 | tier1 | 5UTR-CDS | 4315 | NA | 0.38382 |
| SKCM | TCGA-D3-A2J6-06A | TCGA-D3-A2J6 | CTNNB1|IQCE | CTNNB1 | IQCE | 3 | 7 | 1 | 1 | 2 | 39 | 33 | 3.2 | 41281934 | 2641075 | tier4 | 3UTR-CDS | 4361 | NA | 0.38171 |
| SKCM | TCGA-D3-A2JB-06A | TCGA-D3-A2JB | CTNND1|PACS1 | CTNND1 | PACS1 | 11 | 11 | 1 | 1 | 74 | 56 | 50 | 0.29 | 57529518 | 65960957 | tier1 | 5UTR-CDS | 4373 | NA | 0.38229 |
| SKCM | TCGA-D9-A4Z5-01A | TCGA-D9-A4Z5 | CYB5A|DCC | CYB5A | DCC | 18 | 18 | -1 | 1 | 4 | 1 | 1 | 0.98 | 71958982 | 50848417 | tier2 | Out-of-frame | 4486 | NA | 0.37629 |
| SKCM | TCGA-WE-AAA3-06A | TCGA-WE-AAA3 | CYP7B1|SULF1 | CYP7B1 | SULF1 | 8 | 8 | -1 | 1 | 30 | 13 | 11 | 0.45 | 65711023 | 70475774 | tier1 | CDS-5UTR | 4509 | NA | 0.34431 |
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