Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SKCM | TCGA-EB-A82C-01A | TCGA-EB-A82C | C1orf213|PTCH2 | C1orf213 | PTCH2 | 1 | 1 | 1 | -1 | 4 | 2 | 1 | 0.39 | 23696006 | 45292440 | tier2 | Out-of-frame | 2603 | NA | 0 |
| SKCM | TCGA-EB-A3XC-01A | TCGA-EB-A3XC | C2orf43|RTN4 | C2orf43 | RTN4 | 2 | 2 | -1 | -1 | 17 | 7 | 7 | 0.49 | 20939731 | 55214834 | tier1 | In-frame | 2688 | NA | 0 |
| SKCM | TCGA-W3-A825-06A | TCGA-W3-A825 | C4orf45|MARCH1 | C4orf45 | MARCH1 | 4 | 4 | -1 | -1 | 2 | 1 | 1 | 0.25 | 159881438 | 164534545 | tier2 | Out-of-frame | 2730 | NA | 0 |
| SKCM | TCGA-D3-A1Q3-06A | TCGA-D3-A1Q3 | C5orf42|SEMA5A | C5orf42 | SEMA5A | 5 | 5 | -1 | -1 | 9 | 6 | 6 | 0.11 | 37165641 | 9238002 | tier1 | In-frame | 2738 | NA | 0 |
| SKCM | TCGA-BF-AAP1-01A | TCGA-BF-AAP1 | C7orf30|GPNMB | C7orf30 | GPNMB | 7 | 7 | 1 | 1 | 256 | 218 | 190 | 3.8 | 23347568 | 23306136 | tier1 | In-frame | 2782 | NA | 0 |
| SKCM | TCGA-ER-A19S-06A | TCGA-ER-A19S | C9orf25|NLGN1 | C9orf25 | NLGN1 | 9 | 3 | -1 | 1 | 3 | 1 | 1 | 1.1 | 34458202 | 173993105 | tier2 | Out-of-frame | 2818 | NA | 0 |
| SKCM | TCGA-EE-A2MR-06A | TCGA-EE-A2MR | CACNA1C|DERA | CACNA1C | DERA | 12 | 12 | 1 | 1 | 34 | 42 | 40 | 0.018 | 2622150 | 16109870 | tier1 | In-frame | 2855 | NA | 0.36466 |
| SKCM | TCGA-ER-A19T-01A | TCGA-ER-A19T | CACNA2D2|THRSP | CACNA2D2 | THRSP | 3 | 11 | -1 | 1 | 10 | 7 | 7 | 0.23 | 50540649 | 77778705 | tier1 | CDS-3UTR | 2869 | non-validated | 0.33354 |
| SKCM | TCGA-FS-A1ZU-06A | TCGA-FS-A1ZU | CALD1|SLC41A1 | CALD1 | SLC41A1 | 7 | 1 | 1 | -1 | 56 | 56 | 55 | 0.23 | 134576424 | 205780215 | tier1 | CDS-5UTR | 2905 | non-validated | 0.36466 |
| SKCM | TCGA-FS-A1ZC-06A | TCGA-FS-A1ZC | CAP1|MACF1 | CAP1 | MACF1 | 1 | 1 | 1 | 1 | 3 | 28 | 16 | 0.74 | 40506473 | 39934287 | tier1 | 5UTR-CDS | 2954 | NA | 0.37204 |
| SKCM | TCGA-WE-A8K4-01A | TCGA-WE-A8K4 | CASP8|CFLAR | CASP8 | CFLAR | 2 | 2 | 1 | 1 | 117 | 62 | 58 | 0.038 | 202098835 | 201994452 | tier1 | 5UTR-5UTR | 3023 | NA | 0.37673 |
| SKCM | TCGA-FS-A1ZD-06A | TCGA-FS-A1ZD | CD55|CENPL | CD55 | CENPL | 1 | 1 | 1 | -1 | 16 | 18 | 12 | 0.066 | 207510163 | 173780444 | tier1 | CDS-5UTR | 3278 | non-validated | 0.36593 |
| SKCM | TCGA-D9-A1JW-06A | TCGA-D9-A1JW | CD55|NEK2 | CD55 | NEK2 | 1 | 1 | 1 | -1 | 3 | 3 | 3 | 0.005 | 207512762 | 211836994 | tier1 | In-frame | 3279 | NA | 0.38094 |
| SKCM | TCGA-ER-A19T-01A | TCGA-ER-A19T | CD55|PLD5 | CD55 | PLD5 | 1 | 1 | 1 | -1 | 17 | 15 | 14 | 0.27 | 207512762 | 242383417 | tier1 | In-frame | 3280 | non-validated | 0.36791 |
| SKCM | TCGA-FS-A1YY-06A | TCGA-FS-A1YY | CD81|DNM1L | CD81 | DNM1L | 11 | 12 | 1 | 1 | 2 | 32 | 27 | 3 | 2418627 | 32905677 | tier4 | NA | 3302 | NA | 0.37083 |
| SKCM | TCGA-EE-A2MN-06A | TCGA-EE-A2MN | CDH11|KIFC3 | CDH11 | KIFC3 | 16 | 16 | -1 | -1 | 18 | 10 | 9 | 2.9 | 64982512 | 57795448 | tier1 | Out-of-frame | 3378 | NA | 0.36575 |
| SKCM | TCGA-D3-A2J6-06A | TCGA-D3-A2J6 | CDK18|CNTN2 | CDK18 | CNTN2 | 1 | 1 | 1 | 1 | 6 | 1 | 1 | 0.094 | 205473924 | 205027049 | tier2 | 5UTR-CDS | 3424 | NA | 0.36283 |
| SKCM | TCGA-EE-A29V-06A | TCGA-EE-A29V | CELSR1|C10orf93 | CELSR1 | C10orf93 | 22 | 10 | -1 | -1 | 98 | 98 | 88 | 0.28 | 46929524 | 134628418 | tier1 | In-frame | 3506 | NA | 0 |
| SKCM | TCGA-D3-A2JO-06A | TCGA-D3-A2JO | CELSR1|KIAA1644 | CELSR1 | KIAA1644 | 22 | 22 | -1 | -1 | 5 | 5 | 4 | 0.23 | 46929524 | 44696857 | tier1 | CDS-5UTR | 3509 | NA | 0.3618 |
| SKCM | TCGA-FS-A1ZK-06A | TCGA-FS-A1ZK | CHIC2|SIPA1L3 | CHIC2 | SIPA1L3 | 4 | 19 | -1 | 1 | 11 | 7 | 7 | 0.028 | 54915122 | 38519729 | tier1 | CDS-5UTR | 3680 | non-validated | 0.36012 |
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