Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SKCM | TCGA-FS-A1ZF-06A | TCGA-FS-A1ZF | ANKRD28|TM9SF4 | ANKRD28 | TM9SF4 | 3 | 20 | -1 | 1 | 24 | 14 | 14 | 3.3 | 15836730 | 30720816 | tier1 | CDS-5UTR | 984 | NA | 0.36027 |
| SKCM | TCGA-EB-A5SH-06A | TCGA-EB-A5SH | ANO1|KIF21A | ANO1 | KIF21A | 11 | 12 | 1 | -1 | 5 | 4 | 3 | 1.1 | 69924820 | 39705355 | tier1 | Out-of-frame | 1023 | NA | 0.35053 |
| SKCM | TCGA-FS-A1ZA-06A | TCGA-FS-A1ZA | AP2A2|TOLLIP | AP2A2 | TOLLIP | 11 | 11 | 1 | -1 | 68 | 44 | 43 | 0.6 | 926088 | 1298483 | tier1 | In-frame | 1078 | NA | 0.37172 |
| SKCM | TCGA-GN-A26D-06A | TCGA-GN-A26D | AP3B1|LHFPL2 | AP3B1 | LHFPL2 | 5 | 5 | -1 | -1 | 38 | 21 | 21 | 1.1 | 77536686 | 77860694 | tier1 | CDS-5UTR | 1089 | NA | 0.36721 |
| SKCM | TCGA-ER-A196-01A | TCGA-ER-A196 | APBB1IP|DNAJC1 | APBB1IP | DNAJC1 | 10 | 10 | 1 | -1 | 43 | 33 | 32 | 0.73 | 26830621 | 22218070 | tier1 | In-frame | 1105 | NA | 0.3766 |
| SKCM | TCGA-ER-A42L-06A | TCGA-ER-A42L | APP|CCT8 | APP | CCT8 | 21 | 21 | -1 | -1 | 19 | 22 | 14 | 0.89 | 27542882 | 30442658 | tier1 | In-frame | 1149 | NA | 0.38269 |
| SKCM | TCGA-ER-A3EV-06A | TCGA-ER-A3EV | ARAP1|DYNC2H1 | ARAP1 | DYNC2H1 | 11 | 11 | -1 | 1 | 2 | 1 | 1 | 0.23 | 72432895 | 103062246 | tier2 | 5UTR-CDS | 1172 | NA | 0.37939 |
| SKCM | TCGA-GF-A6C9-06A | TCGA-GF-A6C9 | ARHGAP5|LSAMP | ARHGAP5 | LSAMP | 14 | 3 | 1 | -1 | 21 | 12 | 12 | 0.014 | 32546641 | 116163802 | tier1 | In-frame | 1264 | NA | 0.37867 |
| SKCM | TCGA-FS-A1Z4-06A | TCGA-FS-A1Z4 | ARRB1|GDPD5 | ARRB1 | GDPD5 | 11 | 11 | -1 | -1 | 7 | 11 | 10 | 0.14 | 75062632 | 75173934 | tier1 | Out-of-frame | 1450 | NA | 0.37652 |
| SKCM | TCGA-YG-AA3P-06A | TCGA-YG-AA3P | ARRB1|PAK1 | ARRB1 | PAK1 | 11 | 11 | -1 | -1 | 3 | 13 | 4 | 1.5 | 74993006 | 77103583 | tier1 | NA | 1456 | NA | 0.38411 |
| SKCM | TCGA-EE-A29A-06A | TCGA-EE-A29A | ASTN2|PALM2-AKAP2 | ASTN2 | PALM2-AKAP2 | 9 | 9 | -1 | 1 | 20 | 7 | 7 | 0.1 | 119380603 | 112898407 | tier1 | Out-of-frame | 1548 | NA | 0.34903 |
| SKCM | TCGA-HR-A2OH-01A | TCGA-HR-A2OH | ATP10D|FAM133A | ATP10D | FAM133A | 4 | X | 1 | 1 | 4 | 2 | 2 | 2.8 | 47538955 | 92953396 | tier1 | CDS-5UTR | 1659 | NA | 0.34703 |
| SKCM | TCGA-YG-AA3P-06A | TCGA-YG-AA3P | ATP6V0A1|STAT5B | ATP6V0A1 | STAT5B | 17 | 17 | 1 | -1 | 3 | 6 | 6 | 0.75 | 40610981 | 40384155 | tier1 | 5UTR-5UTR | 1749 | NA | 0.37743 |
| SKCM | TCGA-ER-A3ES-06A | TCGA-ER-A3ES | ATRX|MAGT1 | ATRX | MAGT1 | X | X | -1 | -1 | 2 | 2 | 2 | 0.46 | 76972608 | 77112994 | tier3 | Out-of-frame | 1797 | non-validated | 0.37534 |
| SKCM | TCGA-ER-A2NE-06A | TCGA-ER-A2NE | AVIL|TRHDE | AVIL | TRHDE | 12 | 12 | -1 | 1 | 49 | 32 | 32 | 2.1 | 58201977 | 72680461 | tier1 | Out-of-frame | 1829 | NA | 0.36012 |
| SKCM | TCGA-ER-A198-06A | TCGA-ER-A198 | B2M|PPP4R1 | B2M | PPP4R1 | 15 | 18 | 1 | -1 | 331 | 135 | 126 | 1.7 | 45003811 | 9562073 | tier1 | Out-of-frame | 1848 | NA | 0.36607 |
| SKCM | TCGA-ER-A1A1-06A | TCGA-ER-A1A1 | BANP|JPH3 | BANP | JPH3 | 16 | 16 | 1 | 1 | 8 | 15 | 13 | 0.099 | 88052273 | 87677864 | tier1 | In-frame | 1921 | NA | 0.36052 |
| SKCM | TCGA-WE-A8ZX-06A | TCGA-WE-A8ZX | BBX|SLC38A1 | BBX | SLC38A1 | 3 | 12 | 1 | -1 | 10 | 1 | 1 | 1.1 | 107241954 | 46602910 | tier2 | 5UTR-CDS | 1959 | NA | 0.34705 |
| SKCM | TCGA-GN-A26D-06A | TCGA-GN-A26D | BCAP31|HMGB3 | BCAP31 | HMGB3 | X | X | -1 | 1 | 52 | 110 | 92 | 0.8 | 152986327 | 150154068 | tier1 | CDS-5UTR | 1964 | NA | 0.36294 |
| SKCM | TCGA-D3-A1Q3-06A | TCGA-D3-A1Q3 | C19orf28|CLASP2 | C19orf28 | CLASP2 | 19 | 3 | -1 | -1 | 2 | 2 | 2 | 2.1 | 3544198 | 33602368 | tier3 | NA | 2575 | NA | 0 |
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