Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-DX-A3LT-01A | TCGA-DX-A3LT | ZNRF3|FAM19A5 | ZNRF3 | FAM19A5 | 22 | 22 | 1 | 1 | 8 | 3 | 3 | 0.053 | 29383189 | 49042409 | Out-of-frame | 20702 | non-validated | 0 | |
| SKCM | TCGA-BF-AAP6-01A | TCGA-BF-AAP6 | ABCA1|ZNF483 | ABCA1 | ZNF483 | 9 | 9 | -1 | 1 | 47 | 36 | 33 | 0.39 | 107645320 | 114338645 | tier1 | In-frame | 38 | NA | 0.38874 |
| SKCM | TCGA-DA-A1HW-06A | TCGA-DA-A1HW | ABCC4|PTPN4 | ABCC4 | PTPN4 | 13 | 2 | -1 | 1 | 7 | 5 | 4 | 0.18 | 95953495 | 120690000 | tier1 | In-frame | 66 | validated | 0.37078 |
| SKCM | TCGA-FS-A1ZQ-06A | TCGA-FS-A1ZQ | ABCC5|SPRR4 | ABCC5 | SPRR4 | 3 | 1 | -1 | 1 | 10 | 5 | 5 | 100 | 183645118 | 152944347 | tier1 | CDS-5UTR | 69 | NA | 0.34452 |
| SKCM | TCGA-EB-A82C-01A | TCGA-EB-A82C | ABI1|CUBN | ABI1 | CUBN | 10 | 10 | -1 | -1 | 50 | 20 | 19 | 1.6 | 27149676 | 17032514 | tier1 | Out-of-frame | 99 | NA | 0.37939 |
| SKCM | TCGA-D3-A3CF-06A | TCGA-D3-A3CF | AC008073.6|SNTG2 | AC008073.6 | SNTG2 | 2 | 2 | 1 | 1 | 10 | 14 | 14 | 1.1 | 24358057 | 1312266 | tier1 | In-frame | 149 | NA | 0.35152 |
| SKCM | TCGA-FW-A3I3-06A | TCGA-FW-A3I3 | AC087465.1|NRG4 | AC087465.1 | NRG4 | 15 | 15 | -1 | -1 | 42 | 21 | 19 | 0.003 | 77544709 | 76235995 | tier1 | 5UTR-CDS | 200 | NA | 0.34742 |
| SKCM | TCGA-D9-A1JX-06A | TCGA-D9-A1JX | AC090098.1|TRPM1 | AC090098.1 | TRPM1 | 15 | 15 | -1 | -1 | 17 | 2 | 2 | 0.8 | 33445249 | 31353717 | tier1 | Out-of-frame | 202 | NA | 0.34662 |
| SKCM | TCGA-ER-A3ET-06A | TCGA-ER-A3ET | ADAMTS7|TMEM135 | ADAMTS7 | TMEM135 | 15 | 11 | -1 | 1 | 3 | 5 | 4 | 0.22 | 79103463 | 86947680 | tier1 | Out-of-frame | 443 | NA | 0.34804 |
| SKCM | TCGA-FS-A4F4-06A | TCGA-FS-A4F4 | ADCY2|CLPTM1L | ADCY2 | CLPTM1L | 5 | 5 | 1 | -1 | 127 | 56 | 51 | 0.58 | 7789913 | 1320846 | tier1 | In-frame | 470 | NA | 0.35673 |
| SKCM | TCGA-BF-AAP6-01A | TCGA-BF-AAP6 | ADCY2|PARP8 | ADCY2 | PARP8 | 5 | 5 | 1 | 1 | 44 | 9 | 9 | 0.48 | 7784562 | 50055477 | tier1 | Out-of-frame | 471 | NA | 0.35309 |
| SKCM | TCGA-D3-A3CC-06A | TCGA-D3-A3CC | AEBP2|PRLR | AEBP2 | PRLR | 12 | 5 | 1 | -1 | 30 | 16 | 14 | 0.12 | 19646920 | 35118224 | tier1 | CDS-5UTR | 563 | NA | 0.38277 |
| SKCM | TCGA-EB-A82C-01A | TCGA-EB-A82C | AHDC1|CACHD1 | AHDC1 | CACHD1 | 1 | 1 | -1 | 1 | 6 | 4 | 4 | 1.2 | 27929908 | 65113484 | tier1 | 5UTR-CDS | 682 | NA | 0.35476 |
| SKCM | TCGA-EE-A2GT-06A | TCGA-EE-A2GT | AHNAK|BIRC6 | AHNAK | BIRC6 | 11 | 2 | -1 | 1 | 2 | 19 | 16 | 0.87 | 62283375 | 32820101 | tier4 | 3UTR-CDS | 689 | non-validated | 0.37386 |
| SKCM | TCGA-EE-A181-06A | TCGA-EE-A181 | AKAP6|PRKD1 | AKAP6 | PRKD1 | 14 | 14 | 1 | -1 | 214 | 160 | 155 | 0.027 | 33069998 | 30095762 | tier1 | In-frame | 739 | NA | 0.38568 |
| SKCM | TCGA-ER-A197-06A | TCGA-ER-A197 | AKT3|PTPRR | AKT3 | PTPRR | 1 | 12 | -1 | -1 | 11 | 12 | 12 | 0.18 | 243776973 | 71078044 | tier1 | In-frame | 765 | NA | 0.38391 |
| SKCM | TCGA-Z2-AA3S-06A | TCGA-Z2-AA3S | ALK|STK39 | ALK | STK39 | 2 | 2 | -1 | -1 | 3 | 2 | 2 | 3 | 29940444 | 169038600 | tier1 | In-frame | 842 | NA | 0.38398 |
| SKCM | TCGA-FS-A1ZQ-06A | TCGA-FS-A1ZQ | AMBRA1|LRP4 | AMBRA1 | LRP4 | 11 | 11 | -1 | -1 | 4 | 5 | 5 | 0.44 | 46615378 | 46924480 | tier1 | 5UTR-CDS | 868 | NA | 0.35806 |
| SKCM | TCGA-QB-AA9O-06A | TCGA-QB-AA9O | ANAPC5|ADAM15 | ANAPC5 | ADAM15 | 12 | 1 | -1 | 1 | 187 | 177 | 161 | 3.2 | 121783642 | 155034721 | tier1 | Out-of-frame | 889 | NA | 0.37815 |
| SKCM | TCGA-GN-A26D-06A | TCGA-GN-A26D | ANKH|ANO6 | ANKH | ANO6 | 5 | 12 | -1 | 1 | 11 | 45 | 4 | 0.5 | 14741936 | 45664245 | tier1 | Out-of-frame | 915 | NA | 0.33337 |
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