Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-DX-A3UC-01A | TCGA-DX-A3UC | WDR62|LRFN3 | WDR62 | LRFN3 | 19 | 19 | 1 | 1 | 4 | 2 | 2 | 0.42 | 36574143 | 36430312 | tier1 | CDS-5UTR | 19798 | NA | 0 |
| SARC | TCGA-DX-A8BS-01A | TCGA-DX-A8BS | WDR90|ESYT3 | WDR90 | ESYT3 | 16 | 3 | 1 | 1 | 2 | 2 | 2 | 0.002 | 712331 | 138195065 | tier4 | In-frame | 19815 | NA | 0 |
| SARC | TCGA-DX-A3M1-01A | TCGA-DX-A3M1 | WWP1|UTP23 | WWP1 | UTP23 | 8 | 8 | 1 | 1 | 13 | 12 | 9 | 0.62 | 87443972 | 117783695 | tier1 | Out-of-frame | 19935 | validated | 0 |
| SARC | TCGA-HS-A5N9-01A | TCGA-HS-A5N9 | XPC|DAG1 | XPC | DAG1 | 3 | 3 | -1 | 1 | 37 | 15 | 14 | 2.8 | 14219966 | 49547852 | tier1 | CDS-5UTR | 19954 | NA | 0 |
| SARC | TCGA-DX-A1L0-01A | TCGA-DX-A1L0 | XPR1|TNR | XPR1 | TNR | 1 | 1 | 1 | -1 | 4 | 5 | 3 | 1.6 | 180601406 | 175497505 | tier1 | CDS-5UTR | 19979 | non-validated | 0 |
| SARC | TCGA-DX-AB37-01A | TCGA-DX-AB37 | ZBTB20|CPM | ZBTB20 | CPM | 3 | 12 | -1 | -1 | 3 | 2 | 2 | 0.89 | 114219199 | 69252851 | tier1 | 5UTR-CDS | 20082 | NA | 0 |
| SARC | TCGA-DX-A2J1-01A | TCGA-DX-A2J1 | ZBTB24|BEST3 | ZBTB24 | BEST3 | 6 | 12 | -1 | -1 | 4 | 3 | 3 | 0.69 | 109802278 | 70049593 | tier1 | Out-of-frame | 20101 | NA | 0 |
| SARC | TCGA-FX-A2QS-01A | TCGA-FX-A2QS | ZBTB44|FRS2 | ZBTB44 | FRS2 | 11 | 12 | -1 | 1 | 6 | 21 | 20 | 0.19 | 130184270 | 69955960 | tier1 | 5UTR-5UTR | 20114 | non-validated | 0 |
| SARC | TCGA-DX-AB2F-01A | TCGA-DX-AB2F | ZDHHC14|TSPAN8 | ZDHHC14 | TSPAN8 | 6 | 12 | 1 | -1 | 18 | 9 | 9 | 0.4 | 157803298 | 71676599 | tier1 | CDS-5UTR | 20198 | NA | 0 |
| SARC | TCGA-DX-A1L4-01A | TCGA-DX-A1L4 | ZDHHC17|C10orf112 | ZDHHC17 | C10orf112 | 12 | 10 | 1 | 1 | 5 | 3 | 2 | 0.25 | 77158109 | 19546613 | tier1 | In-frame | 20200 | NA | 0 |
| SARC | TCGA-DX-A3LU-01A | TCGA-DX-A3LU | ZDHHC17|NCR2 | ZDHHC17 | NCR2 | 12 | 6 | 1 | 1 | 119 | 34 | 25 | 0.75 | 77158109 | 41303825 | tier1 | Out-of-frame | 20206 | non-validated | 0 |
| SARC | TCGA-DX-A1KZ-01A | TCGA-DX-A1KZ | ZFP41|LGR5 | ZFP41 | LGR5 | 8 | 12 | 1 | 1 | 7 | 1 | 1 | 0.79 | 144329312 | 71946853 | tier4 | 5UTR-CDS | 20273 | NA | 0 |
| SARC | TCGA-DX-A23Z-01A | TCGA-DX-A23Z | ZMIZ1|CHST3 | ZMIZ1 | CHST3 | 10 | 10 | 1 | 1 | 7 | 1 | 1 | 0.013 | 80878781 | 73765494 | tier2 | 5UTR-5UTR | 20321 | NA | 0 |
| SARC | TCGA-X6-A7WC-01A | TCGA-X6-A7WC | ZNF131|GHR | ZNF131 | GHR | 5 | 5 | 1 | 1 | 3 | 3 | 3 | 1.9 | 43068319 | 42688992 | tier1 | NA | 20360 | NA | 0 |
| SARC | TCGA-FX-A2QS-01A | TCGA-FX-A2QS | ZNF146|ABCA9 | ZNF146 | ABCA9 | 19 | 17 | 1 | -1 | 20 | 10 | 8 | 0.021 | 36709097 | 66992155 | tier1 | 5UTR-CDS | 20369 | non-validated | 0 |
| SARC | TCGA-3B-A9HX-01A | TCGA-3B-A9HX | ZNF431|SIGLEC6 | ZNF431 | SIGLEC6 | 19 | 19 | 1 | -1 | 12 | 8 | 7 | 0.002 | 21326446 | 52034773 | tier1 | Out-of-frame | 20503 | NA | 0 |
| SARC | TCGA-DX-A2J4-01A | TCGA-DX-A2J4 | ZNF44|C12orf28 | ZNF44 | C12orf28 | 19 | 12 | -1 | 1 | 13 | 40 | 39 | 100 | 12405507 | 70346579 | tier1 | Out-of-frame | 20508 | non-validated | 0 |
| SARC | TCGA-3B-A9HO-01A | TCGA-3B-A9HO | ZNF641|C12orf28 | ZNF641 | C12orf28 | 12 | 12 | -1 | 1 | 2 | 5 | 2 | 1.9 | 48741035 | 70249060 | tier2 | CDS-5UTR | 20606 | NA | 0 |
| SARC | TCGA-DX-A3LS-01A | TCGA-DX-A3LS | ZNF71|C12orf28 | ZNF71 | C12orf28 | 19 | 12 | 1 | 1 | 8 | 3 | 3 | 0.35 | 57112959 | 70249060 | tier1 | 5UTR-5UTR | 20639 | non-validated | 0 |
| SARC | TCGA-DX-A23R-01A | TCGA-DX-A23R | ZNF828|PTPRK | ZNF828 | PTPRK | 13 | 6 | 1 | -1 | 2 | 1 | 1 | 0.24 | 115086707 | 128411137 | tier2 | 5UTR-CDS | 20681 | non-validated | 0 |
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