Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-DX-A6Z0-01A | TCGA-DX-A6Z0 | UBE3C|PTPRN2 | UBE3C | PTPRN2 | 7 | 7 | 1 | -1 | 21 | 10 | 9 | 0.072 | 156932032 | 157931207 | tier1 | Out-of-frame | 19110 | NA | 0 |
| SARC | TCGA-VT-A80G-01A | TCGA-VT-A80G | UBP1|SLC24A3 | UBP1 | SLC24A3 | 3 | 20 | -1 | 1 | 42 | 29 | 29 | 0.58 | 33450728 | 19565615 | tier2 | In-frame | 19134 | NA | 0 |
| SARC | TCGA-DX-AB2T-01A | TCGA-DX-AB2T | UGGT2|GPC5 | UGGT2 | GPC5 | 13 | 13 | -1 | 1 | 4 | 1 | 1 | 0.14 | 96529533 | 93518535 | tier2 | Out-of-frame | 19196 | NA | 0 |
| SARC | TCGA-DX-A6BG-01A | TCGA-DX-A6BG | UHRF1BP1L|CACNG3 | UHRF1BP1L | CACNG3 | 12 | 16 | -1 | 1 | 17 | 9 | 9 | 2 | 100536370 | 24372673 | tier1 | Out-of-frame | 19209 | NA | 0 |
| SARC | TCGA-DX-AB2F-01A | TCGA-DX-AB2F | UHRF1BP1L|TRHDE | UHRF1BP1L | TRHDE | 12 | 12 | -1 | 1 | 38 | 37 | 36 | 0.3 | 100536370 | 72680461 | tier1 | In-frame | 19213 | NA | 0 |
| SARC | TCGA-DX-A8BL-01A | TCGA-DX-A8BL | UNK|ITGB4 | UNK | ITGB4 | 17 | 17 | 1 | 1 | 7 | 3 | 3 | 0.02 | 73781065 | 73736439 | tier1 | Out-of-frame | 19260 | NA | 0 |
| SARC | TCGA-DX-A1L4-01A | TCGA-DX-A1L4 | USP30|STAB2 | USP30 | STAB2 | 12 | 12 | 1 | 1 | 3 | 1 | 1 | 1.1 | 109509515 | 104134408 | tier2 | In-frame | 19344 | NA | 0 |
| SARC | TCGA-DX-A1L0-01A | TCGA-DX-A1L0 | USP8|ADAMTSL3 | USP8 | ADAMTSL3 | 15 | 15 | 1 | 1 | 3 | 1 | 1 | 1.5 | 50741682 | 84700087 | tier2 | Out-of-frame | 19432 | non-validated | 0 |
| SARC | TCGA-DX-A6YZ-01A | TCGA-DX-A6YZ | USP8|TSPAN3 | USP8 | TSPAN3 | 15 | 15 | 1 | -1 | 41 | 68 | 60 | 2.8 | 50763992 | 77348597 | tier1 | In-frame | 19436 | NA | 0 |
| SARC | TCGA-SI-A71O-06A | TCGA-SI-A71O | USP9Y|ERC1 | USP9Y | ERC1 | Y | 12 | 1 | 1 | 2 | 3 | 2 | 3.4 | 14851563 | 1345935 | tier4 | Out-of-frame | 19446 | NA | 0 |
| SARC | TCGA-DX-A6YT-01A | TCGA-DX-A6YT | UTP6|SLC13A5 | UTP6 | SLC13A5 | 17 | 17 | -1 | -1 | 3 | 4 | 4 | 0.041 | 30219279 | 6610475 | tier1 | Out-of-frame | 19453 | NA | 0 |
| SARC | TCGA-DX-A23T-01A | TCGA-DX-A23T | UTRN|HEBP2 | UTRN | HEBP2 | 6 | 6 | 1 | 1 | 24 | 56 | 43 | 1.5 | 144613043 | 138726282 | tier1 | Out-of-frame | 19457 | NA | 0 |
| SARC | TCGA-IF-A3RQ-01A | TCGA-IF-A3RQ | UTRN|HMGA2 | UTRN | HMGA2 | 6 | 12 | 1 | 1 | 14 | 10 | 10 | 1 | 145021379 | 66232299 | tier1 | In-frame | 19458 | NA | 0 |
| SARC | TCGA-DX-A6BH-01A | TCGA-DX-A6BH | UTRN|KIAA1244 | UTRN | KIAA1244 | 6 | 6 | 1 | 1 | 9 | 5 | 4 | 0.54 | 144898424 | 138491799 | tier1 | Out-of-frame | 19459 | NA | 0 |
| SARC | TCGA-DX-A6BH-01A | TCGA-DX-A6BH | UTRN|LAMB4 | UTRN | LAMB4 | 6 | 7 | 1 | -1 | 13 | 14 | 13 | 2.6 | 144769905 | 107678040 | tier1 | Out-of-frame | 19460 | NA | 0 |
| SARC | TCGA-DX-A48N-01A | TCGA-DX-A48N | UTRN|OSTF1 | UTRN | OSTF1 | 6 | 9 | 1 | 1 | 19 | 5 | 4 | 0.17 | 145051622 | 77732420 | tier1 | In-frame | 19463 | NA | 0 |
| SARC | TCGA-HB-A3YV-01A | TCGA-HB-A3YV | UTRN|WIF1 | UTRN | WIF1 | 6 | 12 | 1 | -1 | 16 | 5 | 4 | 0.28 | 144809970 | 65471634 | tier1 | In-frame | 19468 | NA | 0 |
| SARC | TCGA-FX-A2QS-01A | TCGA-FX-A2QS | VAMP4|C12orf28 | VAMP4 | C12orf28 | 1 | 12 | -1 | 1 | 4 | 3 | 3 | 2 | 171707489 | 70320351 | tier1 | In-frame | 19500 | validated | 0 |
| SARC | TCGA-FX-A3NK-01A | TCGA-FX-A3NK | WASF1|SLC41A3 | WASF1 | SLC41A3 | 6 | 3 | -1 | -1 | 24 | 15 | 10 | 0.27 | 110434529 | 125731592 | tier2 | In-frame | 19718 | NA | 0 |
| SARC | TCGA-DX-A1KZ-01A | TCGA-DX-A1KZ | WBP11|LGR5 | WBP11 | LGR5 | 12 | 12 | -1 | 1 | 10 | 26 | 21 | 0.45 | 14956286 | 71898394 | tier1 | 5UTR-CDS | 19740 | NA | 0 |
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