Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
| Showing page 270 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-KF-A41W-01A | TCGA-KF-A41W | TMCO3|PRKCZ | TMCO3 | PRKCZ | 13 | 1 | 1 | 1 | 3 | 5 | 5 | 0.88 | 114193822 | 2100957 | tier1 | Out-of-frame | 17905 | NA | 0 |
| SARC | TCGA-DX-A1L4-01A | TCGA-DX-A1L4 | TMEM117|PRIM1 | TMEM117 | PRIM1 | 12 | 12 | 1 | -1 | 8 | 5 | 4 | 0.5 | 44238731 | 57144979 | tier1 | In-frame | 17939 | NA | 0 |
| SARC | TCGA-MB-A8JL-01A | TCGA-MB-A8JL | TMEM117|RP11-366L20.2 | TMEM117 | RP11-366L20.2 | 12 | 12 | 1 | -1 | 11 | 5 | 5 | 0.45 | 44338145 | 66260734 | tier1 | Out-of-frame | 17940 | NA | 0 |
| SARC | TCGA-DX-A8BL-01A | TCGA-DX-A8BL | TMEM161A|TIMM44 | TMEM161A | TIMM44 | 19 | 19 | -1 | -1 | 3 | 2 | 2 | 0.14 | 19240965 | 8000030 | tier1 | Out-of-frame | 17981 | NA | 0 |
| SARC | TCGA-DX-A48N-01A | TCGA-DX-A48N | TMEM2|HMCN1 | TMEM2 | HMCN1 | 9 | 1 | -1 | 1 | 8 | 8 | 7 | 0.1 | 74309425 | 185878469 | tier1 | In-frame | 18006 | NA | 0 |
| SARC | TCGA-3B-A9HO-01A | TCGA-3B-A9HO | TMEM5|PTDSS1 | TMEM5 | PTDSS1 | 12 | 8 | 1 | 1 | 10 | 4 | 4 | 0.36 | 64178852 | 97285527 | tier1 | In-frame | 18030 | NA | 0 |
| SARC | TCGA-FX-A2QS-01A | TCGA-FX-A2QS | TMTC2|C12orf28 | TMTC2 | C12orf28 | 12 | 12 | 1 | 1 | 51 | 5 | 5 | 2.4 | 83081448 | 70297424 | tier2 | Out-of-frame | 18299 | non-validated | 0 |
| SARC | TCGA-DX-A1L4-01A | TCGA-DX-A1L4 | TMTC2|PTPRR | TMTC2 | PTPRR | 12 | 12 | 1 | -1 | 6 | 2 | 1 | 0.22 | 83081448 | 71286757 | tier2 | Out-of-frame | 18304 | NA | 0 |
| SARC | TCGA-DX-A3M1-01A | TCGA-DX-A3M1 | TMTC3|SLC6A15 | TMTC3 | SLC6A15 | 12 | 12 | 1 | -1 | 6 | 1 | 1 | 0.088 | 88536264 | 85286087 | tier2 | 5UTR-5UTR | 18316 | non-validated | 0 |
| SARC | TCGA-DX-A3M1-01A | TCGA-DX-A3M1 | TNFRSF13B|MPRIP | TNFRSF13B | MPRIP | 17 | 17 | -1 | 1 | 19 | 16 | 15 | 0.24 | 16852052 | 16960950 | tier1 | Out-of-frame | 18338 | non-validated | 0 |
| SARC | TCGA-X6-A7WC-01A | TCGA-X6-A7WC | TNIP1|SGCD | TNIP1 | SGCD | 5 | 5 | -1 | 1 | 7 | 4 | 4 | 1.1 | 150418658 | 155550866 | tier2 | CDS-5UTR | 18352 | NA | 0 |
| SARC | TCGA-DX-A6YZ-01A | TCGA-DX-A6YZ | TNRC6B|SEMA6D | TNRC6B | SEMA6D | 22 | 15 | 1 | 1 | 3 | 3 | 3 | 0.33 | 40552186 | 47762671 | tier1 | CDS-5UTR | 18396 | NA | 0 |
| SARC | TCGA-FX-A3NK-01A | TCGA-FX-A3NK | TP53BP1|ATP8B4 | TP53BP1 | ATP8B4 | 15 | 15 | -1 | -1 | 3 | 3 | 2 | 0.11 | 43762056 | 50366382 | tier2 | Out-of-frame | 18470 | NA | 0 |
| SARC | TCGA-DX-A3UA-01A | TCGA-DX-A3UA | TPM3|NTRK1 | TPM3 | NTRK1 | 1 | 1 | -1 | 1 | 15 | 50 | 49 | 3.7 | 154142876 | 156845312 | tier1 | In-frame | 18491 | NA | 0 |
| SARC | TCGA-DX-A6BH-01A | TCGA-DX-A6BH | TRERF1|GPR111 | TRERF1 | GPR111 | 6 | 6 | -1 | 1 | 8 | 15 | 15 | 0.38 | 42418915 | 47641127 | tier1 | 5UTR-5UTR | 18590 | NA | 0 |
| SARC | TCGA-DX-A23V-01A | TCGA-DX-A23V | TRHDE|ANKS1B | TRHDE | ANKS1B | 12 | 12 | 1 | -1 | 7 | 2 | 1 | 0.064 | 72956820 | 99145300 | tier2 | Out-of-frame | 18595 | NA | 0 |
| SARC | TCGA-DX-A3LS-01A | TCGA-DX-A3LS | TRHDE|C12orf75 | TRHDE | C12orf75 | 12 | 12 | 1 | 1 | 9 | 7 | 7 | 0.27 | 72680734 | 105789410 | tier1 | Out-of-frame | 18596 | validated | 0 |
| SARC | TCGA-DX-A23Z-01A | TCGA-DX-A23Z | TRHDE|DPY19L2 | TRHDE | DPY19L2 | 12 | 12 | 1 | -1 | 6 | 4 | 4 | 0.067 | 72680734 | 63976305 | tier1 | In-frame | 18597 | NA | 0 |
| SARC | TCGA-DX-AB2H-01A | TCGA-DX-AB2H | TRHDE|SFSWAP | TRHDE | SFSWAP | 12 | 12 | 1 | 1 | 18 | 4 | 4 | 1.1 | 72969322 | 132249001 | tier1 | Out-of-frame | 18600 | NA | 0 |
| SARC | TCGA-DX-A2IZ-01A | TCGA-DX-A2IZ | TRHDE|TBC1D15 | TRHDE | TBC1D15 | 12 | 12 | 1 | 1 | 10 | 11 | 7 | 0.33 | 72771901 | 72287002 | tier1 | Out-of-frame | 18601 | non-validated | 0 |
|
Showing page 270 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.