Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-DX-A1L0-01A | TCGA-DX-A1L0 | SLC9A8|B4GALT5 | SLC9A8 | B4GALT5 | 20 | 20 | 1 | -1 | 9 | 1 | 1 | 1.1 | 48431726 | 48273239 | tier3 | In-frame | 16301 | validated | 0 |
| SARC | TCGA-DX-A1KY-01A | TCGA-DX-A1KY | SLCO3A1|ITGA11 | SLCO3A1 | ITGA11 | 15 | 15 | 1 | -1 | 2 | 4 | 2 | 0.021 | 92459688 | 68643740 | tier2 | Out-of-frame | 16315 | NA | 0 |
| SARC | TCGA-DX-A1KZ-01A | TCGA-DX-A1KZ | SLIT3|ITPR2 | SLIT3 | ITPR2 | 5 | 12 | -1 | -1 | 14 | 10 | 8 | 0.3 | 168620483 | 26943160 | tier1 | In-frame | 16320 | NA | 0 |
| SARC | TCGA-IE-A3OV-01A | TCGA-IE-A3OV | SMG6|RECK | SMG6 | RECK | 17 | 9 | -1 | 1 | 4 | 1 | 1 | 1.1 | 2139786 | 36107973 | tier2 | In-frame | 16422 | NA | 0 |
| SARC | TCGA-3B-A9HY-01A | TCGA-3B-A9HY | SORBS1|FAM135B | SORBS1 | FAM135B | 10 | 8 | -1 | -1 | 87 | 73 | 69 | 0.043 | 97106163 | 139255311 | tier1 | In-frame | 16589 | NA | 0 |
| SARC | TCGA-DX-AB2Q-01A | TCGA-DX-AB2Q | SOX5|GUCY2C | SOX5 | GUCY2C | 12 | 12 | -1 | -1 | 2 | 1 | 1 | 3.3 | 23818378 | 14766225 | tier3 | Out-of-frame | 16619 | NA | 0 |
| SARC | TCGA-DX-AB2Z-01A | TCGA-DX-AB2Z | SPAG1|ANGPT1 | SPAG1 | ANGPT1 | 8 | 8 | 1 | -1 | 6 | 1 | 1 | 0.014 | 101245765 | 108359325 | tier3 | In-frame | 16645 | NA | 0 |
| SARC | TCGA-QQ-A5VA-01A | TCGA-QQ-A5VA | SPECC1L|TM6SF1 | SPECC1L | TM6SF1 | 22 | 15 | 1 | 1 | 16 | 4 | 4 | 0.49 | 24765288 | 83796110 | tier1 | In-frame | 16703 | NA | 0 |
| SARC | TCGA-DX-A23Z-01A | TCGA-DX-A23Z | SRGAP1|PTPRR | SRGAP1 | PTPRR | 12 | 12 | 1 | -1 | 6 | 7 | 5 | 1.1 | 64238663 | 71158558 | tier1 | Out-of-frame | 16843 | NA | 0 |
| SARC | TCGA-DX-A2J1-01A | TCGA-DX-A2J1 | SRGAP1|TMEM5 | SRGAP1 | TMEM5 | 12 | 12 | 1 | 1 | 39 | 46 | 40 | 2.2 | 64238663 | 64202455 | tier1 | Out-of-frame | 16845 | NA | 0 |
| SARC | TCGA-DX-AATS-01A | TCGA-DX-AATS | ST7|CNTNAP2 | ST7 | CNTNAP2 | 7 | 7 | 1 | 1 | 15 | 2 | 2 | 1 | 116849991 | 147869334 | tier1 | In-frame | 16960 | NA | 0 |
| SARC | TCGA-DX-A23Y-01A | TCGA-DX-A23Y | STAG1|ANKS1B | STAG1 | ANKS1B | 3 | 12 | -1 | -1 | 6 | 2 | 2 | 0.069 | 136183723 | 99548173 | tier1 | Out-of-frame | 16979 | NA | 0 |
| SARC | TCGA-DX-A3M1-01A | TCGA-DX-A3M1 | STAT5B|ODZ4 | STAT5B | ODZ4 | 17 | 11 | -1 | -1 | 3 | 3 | 3 | 0.21 | 40368032 | 78926954 | tier1 | CDS-5UTR | 17019 | validated | 0 |
| SARC | TCGA-DX-A3LY-01B | TCGA-DX-A3LY | STK40|OSCP1 | STK40 | OSCP1 | 1 | 1 | -1 | -1 | 7 | 8 | 5 | 3.1 | 36851324 | 36904511 | tier1 | 5UTR-CDS | 17094 | non-validated | 0 |
| SARC | TCGA-DX-A6Z0-01A | TCGA-DX-A6Z0 | STX6|SMYD3 | STX6 | SMYD3 | 1 | 1 | -1 | -1 | 12 | 4 | 3 | 0.93 | 180991775 | 246093239 | tier4 | Out-of-frame | 17139 | NA | 0 |
| SARC | TCGA-PC-A5DM-01A | TCGA-PC-A5DM | STXBP5|TNFRSF19 | STXBP5 | TNFRSF19 | 6 | 13 | 1 | 1 | 12 | 6 | 6 | 0.078 | 147660520 | 24247511 | tier1 | Out-of-frame | 17151 | NA | 0 |
| SARC | TCGA-DX-A8BR-01A | TCGA-DX-A8BR | SULF2|PEX5L | SULF2 | PEX5L | 20 | 3 | -1 | -1 | 5 | 1 | 1 | 1.6 | 46385933 | 179689453 | tier3 | Out-of-frame | 17178 | NA | 0 |
| SARC | TCGA-K1-A6RU-01A | TCGA-K1-A6RU | SULF2|TSHZ2 | SULF2 | TSHZ2 | 20 | 20 | -1 | 1 | 11 | 2 | 2 | 0.39 | 46365447 | 52103683 | tier1 | CDS-3UTR | 17179 | NA | 0 |
| SARC | TCGA-DX-AB2P-01A | TCGA-DX-AB2P | SULF2|WFDC3 | SULF2 | WFDC3 | 20 | 20 | -1 | -1 | 37 | 15 | 12 | 0.17 | 46365447 | 44404241 | tier4 | In-frame | 17180 | NA | 0 |
| SARC | TCGA-K1-A6RU-01A | TCGA-K1-A6RU | SVEP1|TJP2 | SVEP1 | TJP2 | 9 | 9 | -1 | 1 | 30 | 22 | 19 | 2 | 113275206 | 71864291 | tier1 | Out-of-frame | 17217 | NA | 0 |
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