Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
| Showing page 266 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-FX-A48G-01A | TCGA-FX-A48G | RPTOR|GPC3 | RPTOR | GPC3 | 17 | X | 1 | -1 | 11 | 4 | 4 | 0.18 | 78519591 | 133087238 | tier1 | Out-of-frame | 15107 | non-validated | 0 |
| SARC | TCGA-DX-A23Z-01A | TCGA-DX-A23Z | RSPH3|NOTCH4 | RSPH3 | NOTCH4 | 6 | 6 | -1 | -1 | 6 | 12 | 10 | 0.22 | 159420467 | 32171659 | tier1 | Out-of-frame | 15156 | NA | 0 |
| SARC | TCGA-FX-A3TO-01A | TCGA-FX-A3TO | RTN4RL2|P2RX3 | RTN4RL2 | P2RX3 | 11 | 11 | 1 | 1 | 8 | 2 | 2 | 0.14 | 57235563 | 57135483 | tier1 | Out-of-frame | 15173 | NA | 0 |
| SARC | TCGA-IW-A3M6-01A | TCGA-IW-A3M6 | S100A6|THSD4 | S100A6 | THSD4 | 1 | 15 | -1 | 1 | 2 | 184 | 160 | 2.7 | 153507075 | 72072881 | tier3 | 3UTR-CDS | 15242 | NA | 0 |
| SARC | TCGA-DX-A8BU-01A | TCGA-DX-A8BU | SAE1|HAS1 | SAE1 | HAS1 | 19 | 19 | 1 | -1 | 44 | 26 | 14 | 0.19 | 47634285 | 52223148 | tier1 | CDS-5UTR | 15266 | NA | 0 |
| SARC | TCGA-DX-A1L4-01A | TCGA-DX-A1L4 | SASH1|STAB2 | SASH1 | STAB2 | 6 | 12 | 1 | 1 | 12 | 17 | 17 | 0.65 | 148867282 | 104152911 | tier1 | In-frame | 15323 | NA | 0 |
| SARC | TCGA-DX-A23Z-01A | TCGA-DX-A23Z | SC5DL|SPA17 | SC5DL | SPA17 | 11 | 11 | 1 | 1 | 81 | 394 | 349 | 1.5 | 121163525 | 124545134 | tier1 | 5UTR-5UTR | 15359 | NA | 0 |
| SARC | TCGA-HB-A3YV-01A | TCGA-HB-A3YV | SCAF8|IL20RA | SCAF8 | IL20RA | 6 | 6 | 1 | -1 | 55 | 37 | 33 | 0.052 | 155114110 | 137338240 | tier1 | In-frame | 15367 | NA | 0 |
| SARC | TCGA-X6-A8C2-01A | TCGA-X6-A8C2 | SCAMP2|SLCO3A1 | SCAMP2 | SLCO3A1 | 15 | 15 | -1 | 1 | 7 | 4 | 3 | 0.039 | 75165540 | 92638111 | tier1 | Out-of-frame | 15375 | NA | 0 |
| SARC | TCGA-3B-A9HL-01A | TCGA-3B-A9HL | SCN8A|ANO2 | SCN8A | ANO2 | 12 | 12 | 1 | -1 | 46 | 44 | 42 | 0.96 | 52056877 | 5756967 | tier1 | In-frame | 15427 | NA | 0 |
| SARC | TCGA-DX-AB2G-01A | TCGA-DX-AB2G | SCN8A|PPFIA2 | SCN8A | PPFIA2 | 12 | 12 | 1 | -1 | 4 | 3 | 2 | 0.11 | 52145377 | 81851645 | tier1 | In-frame | 15430 | NA | 0 |
| SARC | TCGA-DX-AB2H-01A | TCGA-DX-AB2H | SCYL3|TSPAN8 | SCYL3 | TSPAN8 | 1 | 12 | -1 | -1 | 12 | 7 | 5 | 0.19 | 169857817 | 71551567 | tier1 | CDS-5UTR | 15456 | NA | 0 |
| SARC | TCGA-3B-A9HO-01A | TCGA-3B-A9HO | SDC2|LIN7A | SDC2 | LIN7A | 8 | 12 | 1 | -1 | 9 | 3 | 3 | 0.23 | 97506271 | 81283148 | tier1 | 5UTR-CDS | 15463 | NA | 0 |
| SARC | TCGA-DX-A23U-01A | TCGA-DX-A23U | SDK1|BRAT1 | SDK1 | BRAT1 | 7 | 7 | 1 | -1 | 6 | 8 | 6 | 0.089 | 3861215 | 2583596 | tier1 | In-frame | 15487 | NA | 0 |
| SARC | TCGA-DX-AB2H-01A | TCGA-DX-AB2H | SDK2|TMTC2 | SDK2 | TMTC2 | 17 | 12 | -1 | 1 | 21 | 11 | 11 | 0.68 | 71375316 | 83250789 | tier1 | Out-of-frame | 15489 | NA | 0 |
| SARC | TCGA-3B-A9HL-01A | TCGA-3B-A9HL | SEC16A|SLCO5A1 | SEC16A | SLCO5A1 | 9 | 8 | -1 | -1 | 2 | 1 | 1 | 0.34 | 139353586 | 70650439 | tier2 | Out-of-frame | 15500 | NA | 0 |
| SARC | TCGA-DX-A7EU-01A | TCGA-DX-A7EU | SEC24A|CDH18 | SEC24A | CDH18 | 5 | 5 | 1 | -1 | 2 | 1 | 1 | 2.8 | 133984863 | 19544114 | tier3 | Out-of-frame | 15513 | NA | 0 |
| SARC | TCGA-FX-A2QS-01A | TCGA-FX-A2QS | SEMA5A|SLC6A19 | SEMA5A | SLC6A19 | 5 | 5 | -1 | 1 | 94 | 37 | 30 | 0.18 | 9066533 | 1208861 | tier1 | In-frame | 15566 | validated | 0 |
| SARC | TCGA-DX-AATS-01A | TCGA-DX-AATS | SENP6|BAI3 | SENP6 | BAI3 | 6 | 6 | 1 | 1 | 17 | 13 | 12 | 0.41 | 76312292 | 70064125 | tier1 | Out-of-frame | 15582 | NA | 0 |
| SARC | TCGA-LI-A9QH-01A | TCGA-LI-A9QH | SETD2|CCRL2 | SETD2 | CCRL2 | 3 | 3 | -1 | 1 | 103 | 8 | 7 | 0.15 | 47139445 | 46449559 | tier1 | In-frame | 15687 | NA | 0 |
|
Showing page 266 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.