Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-DX-AB2E-01A | TCGA-DX-AB2E | PLEC|JPH1 | PLEC | JPH1 | 8 | 8 | -1 | -1 | 8 | 10 | 9 | 0.2 | 145012319 | 75171738 | tier1 | Out-of-frame | 12987 | NA | 0.34053 |
| SARC | TCGA-DX-A1KZ-01A | TCGA-DX-A1KZ | PLEKHB2|GABRR1 | PLEKHB2 | GABRR1 | 2 | 6 | 1 | -1 | 19 | 35 | 33 | 0.14 | 131862971 | 89910984 | tier1 | 5UTR-CDS | 13017 | NA | 0.36618 |
| SARC | TCGA-HB-A3YV-01A | TCGA-HB-A3YV | PLP1|SCAF8 | PLP1 | SCAF8 | X | 6 | 1 | 1 | 17 | 11 | 11 | 0.16 | 103031927 | 155095123 | tier1 | Out-of-frame | 13043 | NA | 0.341 |
| SARC | TCGA-FX-A3TO-01A | TCGA-FX-A3TO | PLXDC1|ACE | PLXDC1 | ACE | 17 | 17 | -1 | 1 | 14 | 12 | 12 | 0.26 | 37307615 | 61566009 | tier1 | In-frame | 13054 | NA | 0.35849 |
| SARC | TCGA-FX-A76Y-01A | TCGA-FX-A76Y | PLXDC2|PDCD11 | PLXDC2 | PDCD11 | 10 | 10 | 1 | 1 | 12 | 6 | 4 | 0.058 | 20466338 | 105182745 | tier1 | Out-of-frame | 13057 | NA | 0.35527 |
| SARC | TCGA-SG-A6Z7-01A | TCGA-SG-A6Z7 | PLXNA4|TRHDE | PLXNA4 | TRHDE | 7 | 12 | -1 | 1 | 5 | 2 | 2 | 0.79 | 132261181 | 72680461 | tier1 | 5UTR-CDS | 13068 | NA | 0.35828 |
| SARC | TCGA-DX-A2IZ-01A | TCGA-DX-A2IZ | PLXNC1|CCDC41 | PLXNC1 | CCDC41 | 12 | 12 | 1 | -1 | 388 | 265 | 211 | 0.24 | 94659001 | 94706793 | tier1 | In-frame | 13078 | validated | 0.36074 |
| SARC | TCGA-3B-A9HS-01A | TCGA-3B-A9HS | PLXNC1|INSR | PLXNC1 | INSR | 12 | 19 | 1 | -1 | 14 | 9 | 9 | 0.68 | 94694833 | 7267907 | tier1 | Out-of-frame | 13081 | NA | 0.39066 |
| SARC | TCGA-DX-A3U5-01A | TCGA-DX-A3U5 | PLXNC1|TXNRD1 | PLXNC1 | TXNRD1 | 12 | 12 | 1 | 1 | 263 | 140 | 126 | 1 | 94676177 | 104742131 | tier1 | In-frame | 13082 | validated | 0.36536 |
| SARC | TCGA-DX-AB37-01A | TCGA-DX-AB37 | PLXND1|NEK11 | PLXND1 | NEK11 | 3 | 3 | -1 | 1 | 45 | 38 | 34 | 0.21 | 129304795 | 131068401 | tier1 | Out-of-frame | 13083 | NA | 0.37263 |
| SARC | TCGA-SG-A6Z7-01A | TCGA-SG-A6Z7 | POC1B|TNR | POC1B | TNR | 12 | 1 | -1 | -1 | 6 | 2 | 2 | 0.048 | 89885713 | 175375913 | tier1 | CDS-5UTR | 13130 | NA | 0.36717 |
| SARC | TCGA-X6-A7WB-01A | TCGA-X6-A7WB | PPARD|SLC22A7 | PPARD | SLC22A7 | 6 | 6 | 1 | 1 | 12 | 6 | 6 | 0.098 | 35378994 | 43267636 | tier1 | In-frame | 13226 | NA | 0.38041 |
| SARC | TCGA-DX-AB2G-01A | TCGA-DX-AB2G | PPFIA2|KCNMB4 | PPFIA2 | KCNMB4 | 12 | 12 | -1 | 1 | 59 | 25 | 24 | 0.26 | 81719556 | 70824265 | tier1 | In-frame | 13273 | NA | 0.35979 |
| SARC | TCGA-FX-A3NK-01A | TCGA-FX-A3NK | PPFIA2|TRHDE | PPFIA2 | TRHDE | 12 | 12 | -1 | 1 | 26 | 19 | 16 | 0.007 | 82147752 | 72771775 | tier1 | In-frame | 13276 | NA | 0.36432 |
| SARC | TCGA-DX-A23Y-01A | TCGA-DX-A23Y | PPIL4|CLEC4A | PPIL4 | CLEC4A | 6 | 12 | -1 | 1 | 26 | 15 | 14 | 0.35 | 149846279 | 8288181 | tier1 | Out-of-frame | 13299 | NA | 0.36399 |
| SARC | TCGA-HS-A5NA-01A | TCGA-HS-A5NA | PPM1G|LPAR1 | PPM1G | LPAR1 | 2 | 9 | -1 | -1 | 2 | 2 | 2 | 0.3 | 27609956 | 113735838 | tier3 | CDS-5UTR | 13317 | NA | 0.3627 |
| SARC | TCGA-DX-A23Y-01A | TCGA-DX-A23Y | PPP1CC|KCNC2 | PPP1CC | KCNC2 | 12 | 12 | -1 | -1 | 36 | 30 | 27 | 0.16 | 111180458 | 75434986 | tier1 | CDS-3UTR | 13344 | NA | 0.37582 |
| SARC | TCGA-DX-A7EI-01A | TCGA-DX-A7EI | PRICKLE1|LRIG3 | PRICKLE1 | LRIG3 | 12 | 12 | -1 | -1 | 49 | 78 | 66 | 0.62 | 42983267 | 59284578 | tier1 | 5UTR-CDS | 13516 | NA | 0.35417 |
| SARC | TCGA-HS-A5N9-01A | TCGA-HS-A5N9 | PRKCA|PI4KA | PRKCA | PI4KA | 17 | 22 | 1 | -1 | 2 | 1 | 1 | 0.032 | 64302245 | 21161746 | tier3 | Out-of-frame | 13544 | NA | 0.38383 |
| SARC | TCGA-3B-A9HS-01A | TCGA-3B-A9HS | PRKCA|RAB40B | PRKCA | RAB40B | 17 | 17 | 1 | -1 | 2 | 2 | 2 | 1.2 | 64302245 | 80617533 | tier3 | Out-of-frame | 13548 | NA | 0.38502 |
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