Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-QC-AA9N-01A | TCGA-QC-AA9N | NCAM2|RORB | NCAM2 | RORB | 21 | 9 | 1 | 1 | 2 | 2 | 1 | 0.024 | 22370936 | 77245198 | tier2 | In-frame | 11144 | NA | 0.37225 |
| SARC | TCGA-DX-A1KU-01A | TCGA-DX-A1KU | NCOA3|PTPRT | NCOA3 | PTPRT | 20 | 20 | 1 | -1 | 2 | 3 | 3 | 0.002 | 46130763 | 41101202 | tier3 | 5UTR-CDS | 11204 | non-validated | 0.3773 |
| SARC | TCGA-QQ-A8VH-01A | TCGA-QQ-A8VH | NCOR2|SCARB1 | NCOR2 | SCARB1 | 12 | 12 | -1 | -1 | 25 | 58 | 57 | 0.08 | 124904503 | 125302253 | tier1 | In-frame | 11262 | NA | 0.37966 |
| SARC | TCGA-DX-A3M1-01A | TCGA-DX-A3M1 | NDUFB9|CSMD3 | NDUFB9 | CSMD3 | 8 | 8 | 1 | -1 | 5 | 7 | 7 | 0.62 | 125555520 | 114327022 | tier1 | Out-of-frame | 11302 | validated | 0.361 |
| SARC | TCGA-FX-A2QS-01A | TCGA-FX-A2QS | NDUFS2|SLC24A2 | NDUFS2 | SLC24A2 | 1 | 9 | 1 | -1 | 27 | 10 | 10 | 0.57 | 161172270 | 19597277 | tier1 | Out-of-frame | 11305 | validated | 0.3393 |
| SARC | TCGA-DX-AB36-01A | TCGA-DX-AB36 | NEGR1|ZFYVE9 | NEGR1 | ZFYVE9 | 1 | 1 | -1 | 1 | 22 | 13 | 12 | 0.29 | 72748002 | 52682041 | tier1 | CDS-5UTR | 11347 | NA | 0.37134 |
| SARC | TCGA-3B-A9HL-01A | TCGA-3B-A9HL | NELL2|MUC21 | NELL2 | MUC21 | 12 | 6 | -1 | 1 | 17 | 6 | 5 | 0.47 | 45059267 | 30954014 | tier1 | In-frame | 11370 | NA | 0.35453 |
| SARC | TCGA-DX-AATS-01A | TCGA-DX-AATS | NEO1|BBS4 | NEO1 | BBS4 | 15 | 15 | 1 | 1 | 4 | 3 | 3 | 0.051 | 73428368 | 73002041 | tier1 | In-frame | 11378 | NA | 0.37332 |
| SARC | TCGA-MB-A8JK-01A | TCGA-MB-A8JK | NEO1|ZFAT | NEO1 | ZFAT | 15 | 8 | 1 | -1 | 23 | 21 | 19 | 0.097 | 73428368 | 135669980 | tier1 | In-frame | 11382 | NA | 0.3747 |
| SARC | TCGA-MB-A8JK-01A | TCGA-MB-A8JK | NFIX|SEMA3A | NFIX | SEMA3A | 19 | 7 | 1 | -1 | 3 | 7 | 7 | 4 | 13136366 | 83614793 | tier1 | Out-of-frame | 11505 | NA | 0.37387 |
| SARC | TCGA-DX-A240-01A | TCGA-DX-A240 | NHS|F11R | NHS | F11R | X | 1 | 1 | -1 | 20 | 10 | 9 | 5.1 | 17394445 | 160971143 | tier1 | In-frame | 11534 | validated | 0.37626 |
| SARC | TCGA-DX-A48U-01A | TCGA-DX-A48U | NLGN4Y|SHISA6 | NLGN4Y | SHISA6 | Y | 17 | 1 | 1 | 6 | 4 | 3 | 0.56 | 16835149 | 11459057 | tier1 | In-frame | 11597 | validated | 0.334 |
| SARC | TCGA-3B-A9HS-01A | TCGA-3B-A9HS | NOC2L|LRRC38 | NOC2L | LRRC38 | 1 | 1 | -1 | -1 | 6 | 3 | 3 | 0.22 | 889162 | 13802567 | tier1 | Out-of-frame | 11628 | NA | 0.3523 |
| SARC | TCGA-DX-A6BG-01A | TCGA-DX-A6BG | NOTCH1|UHRF1BP1L | NOTCH1 | UHRF1BP1L | 9 | 12 | -1 | -1 | 2 | 1 | 1 | 1.7 | 139408962 | 100463947 | tier2 | Out-of-frame | 11663 | NA | 0.38573 |
| SARC | TCGA-FX-A3NK-01A | TCGA-FX-A3NK | NOTCH3|CACNA1A | NOTCH3 | CACNA1A | 19 | 19 | -1 | -1 | 2 | 6 | 6 | 0.059 | 15308311 | 13482593 | tier2 | In-frame | 11673 | NA | 0.37627 |
| SARC | TCGA-DX-A6YR-01A | TCGA-DX-A6YR | NRIP1|DSCAM | NRIP1 | DSCAM | 21 | 21 | -1 | -1 | 3 | 10 | 10 | 0.055 | 16386665 | 41455933 | tier1 | 5UTR-CDS | 11752 | NA | 0.37912 |
| SARC | TCGA-DX-A2IZ-01A | TCGA-DX-A2IZ | NT5DC3|PTPRR | NT5DC3 | PTPRR | 12 | 12 | -1 | -1 | 4 | 4 | 3 | 0.26 | 104208715 | 71158558 | tier1 | In-frame | 11822 | validated | 0.37113 |
| SARC | TCGA-SI-A71O-01A | TCGA-SI-A71O | NTM|CTNNA2 | NTM | CTNNA2 | 11 | 2 | 1 | 1 | 19 | 10 | 7 | 0.49 | 132082041 | 80085139 | tier1 | In-frame | 11827 | NA | 0.34559 |
| SARC | TCGA-K1-A6RV-01A | TCGA-K1-A6RV | NTM|SORL1 | NTM | SORL1 | 11 | 11 | 1 | 1 | 15 | 13 | 9 | 0.35 | 131781542 | 121475822 | tier1 | Out-of-frame | 11828 | NA | 0.36106 |
| SARC | TCGA-DX-A3M1-01A | TCGA-DX-A3M1 | NTN4|TRHDE | NTN4 | TRHDE | 12 | 12 | -1 | 1 | 11 | 12 | 7 | 0.21 | 96104219 | 72680461 | tier1 | Out-of-frame | 11836 | validated | 0.35969 |
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