Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-DX-A8BH-01A | TCGA-DX-A8BH | MFSD1|SPTSSB | MFSD1 | SPTSSB | 3 | 3 | 1 | -1 | 4 | 4 | 4 | 3.3 | 158531856 | 161077682 | tier1 | CDS-5UTR | 10291 | NA | 0.33308 |
| SARC | TCGA-SI-A71Q-01A | TCGA-SI-A71Q | MIB1|HLTF | MIB1 | HLTF | 18 | 3 | 1 | -1 | 2 | 3 | 3 | 0.52 | 19353689 | 148802676 | tier2 | Out-of-frame | 10333 | NA | 0.37829 |
| SARC | TCGA-DX-A23R-01A | TCGA-DX-A23R | MKRN1|NLGN1 | MKRN1 | NLGN1 | 7 | 3 | -1 | 1 | 13 | 5 | 4 | 0.32 | 140171683 | 173993105 | tier1 | Out-of-frame | 10435 | validated | 0.3645 |
| SARC | TCGA-QC-AA9N-01A | TCGA-QC-AA9N | MLEC|STX2 | MLEC | STX2 | 12 | 12 | 1 | -1 | 4 | 1 | 1 | 0.23 | 121125334 | 131306333 | tier2 | Out-of-frame | 10441 | NA | 0.35697 |
| SARC | TCGA-3B-A9HL-01A | TCGA-3B-A9HL | MLLT1|CRLF1 | MLLT1 | CRLF1 | 19 | 19 | -1 | -1 | 4 | 1 | 1 | 0.29 | 6230581 | 18710656 | tier2 | Out-of-frame | 10501 | NA | 0.36199 |
| SARC | TCGA-DX-A3LS-01A | TCGA-DX-A3LS | MLXIP|ANKS1B | MLXIP | ANKS1B | 12 | 12 | 1 | -1 | 2 | 2 | 2 | 0.8 | 122517172 | 99478801 | tier2 | Out-of-frame | 10534 | validated | 0.37487 |
| SARC | TCGA-DX-A3LS-01A | TCGA-DX-A3LS | MLXIP|TSPAN8 | MLXIP | TSPAN8 | 12 | 12 | 1 | -1 | 68 | 10 | 9 | 0.31 | 122517172 | 71835367 | tier1 | CDS-5UTR | 10536 | non-validated | 0.35686 |
| SARC | TCGA-IW-A3M6-01A | TCGA-IW-A3M6 | MMP14|CCT5 | MMP14 | CCT5 | 14 | 5 | 1 | 1 | 2 | 2 | 2 | 0.14 | 23316970 | 10250033 | tier3 | 3UTR-5UTR | 10544 | NA | 0.37158 |
| SARC | TCGA-DX-A3M1-01A | TCGA-DX-A3M1 | MPRIP|TNFRSF13B | MPRIP | TNFRSF13B | 17 | 17 | 1 | -1 | 36 | 41 | 27 | 0.24 | 16946285 | 16855897 | tier1 | Out-of-frame | 10631 | validated | 0.36501 |
| SARC | TCGA-DX-A2J0-01A | TCGA-DX-A2J0 | MPZL1|TNFSF4 | MPZL1 | TNFSF4 | 1 | 1 | 1 | -1 | 84 | 52 | 41 | 2.2 | 167745403 | 173157708 | tier1 | In-frame | 10636 | validated | 0.36968 |
| SARC | TCGA-DX-AB36-01A | TCGA-DX-AB36 | MVK|CPM | MVK | CPM | 12 | 12 | 1 | -1 | 133 | 90 | 79 | 0.28 | 110023930 | 69250459 | tier1 | Out-of-frame | 10862 | NA | 0.34928 |
| SARC | TCGA-IE-A3OV-01A | TCGA-IE-A3OV | MXRA8|SUPT16H | MXRA8 | SUPT16H | 1 | 14 | -1 | -1 | 2 | 9 | 8 | 0.44 | 1288072 | 21829491 | tier3 | 3UTR-CDS | 10873 | NA | 0.37211 |
| SARC | TCGA-X6-A8C5-01A | TCGA-X6-A8C5 | MYH10|OLFM4 | MYH10 | OLFM4 | 17 | 13 | -1 | 1 | 8 | 6 | 6 | 0.23 | 8533972 | 53608483 | tier1 | 5UTR-CDS | 10886 | NA | 0.37584 |
| SARC | TCGA-DX-A3U9-01A | TCGA-DX-A3U9 | MYL6|ABI3BP | MYL6 | ABI3BP | 12 | 3 | 1 | -1 | 2 | 3 | 3 | 1.2 | 56555359 | 100557308 | tier3 | 3UTR-CDS | 10923 | NA | 0.37326 |
| SARC | TCGA-HB-A3L4-01A | TCGA-HB-A3L4 | MYLK|PARP1 | MYLK | PARP1 | 3 | 1 | -1 | -1 | 2 | 193 | 141 | 0.033 | 123331145 | 224102800 | tier4 | NA | 10933 | NA | 0.39236 |
| SARC | TCGA-WP-A9GB-01A | TCGA-WP-A9GB | MYLK|USP48 | MYLK | USP48 | 3 | 1 | -1 | -1 | 4 | 3 | 3 | 0.47 | 123512524 | 22016592 | tier1 | In-frame | 10936 | validated | 0.38839 |
| SARC | TCGA-DX-A6BG-01A | TCGA-DX-A6BG | MYLK|VAMP4 | MYLK | VAMP4 | 3 | 1 | -1 | -1 | 7 | 6 | 5 | 1.8 | 123512524 | 171679954 | tier1 | Out-of-frame | 10937 | NA | 0.38926 |
| SARC | TCGA-VT-A80J-01A | TCGA-VT-A80J | MYO5A|NEDD4 | MYO5A | NEDD4 | 15 | 15 | -1 | -1 | 11 | 11 | 7 | 0.26 | 52632393 | 56216897 | tier1 | In-frame | 10987 | NA | 0.38262 |
| SARC | TCGA-FX-A76Y-01A | TCGA-FX-A76Y | MYPN|PLXDC2 | MYPN | PLXDC2 | 10 | 10 | 1 | 1 | 3 | 6 | 5 | 0.66 | 69918384 | 20453397 | tier1 | Out-of-frame | 11019 | NA | 0.36071 |
| SARC | TCGA-DX-A3LT-01A | TCGA-DX-A3LT | NAP1L1|PTPRR | NAP1L1 | PTPRR | 12 | 12 | -1 | -1 | 66 | 34 | 34 | 0.054 | 76478347 | 71158558 | tier1 | 5UTR-CDS | 11080 | validated | 0.37369 |
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