Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-X6-A8C3-01A | TCGA-X6-A8C3 | MACF1|SHISA6 | MACF1 | SHISA6 | 1 | 17 | 1 | 1 | 8 | 5 | 5 | 0.047 | 39723700 | 11282731 | tier1 | Out-of-frame | 9735 | NA | 0.36525 |
| SARC | TCGA-DX-AB2F-01A | TCGA-DX-AB2F | MAN1A1|MAGT1 | MAN1A1 | MAGT1 | 6 | X | -1 | -1 | 5 | 14 | 13 | 0.72 | 119611848 | 77086392 | tier4 | Out-of-frame | 9801 | NA | 0.33459 |
| SARC | TCGA-DX-A6YU-01A | TCGA-DX-A6YU | MAN2A1|HTR4 | MAN2A1 | HTR4 | 5 | 5 | 1 | -1 | 12 | 5 | 4 | 0.012 | 109125228 | 147830835 | tier1 | CDS-3UTR | 9816 | NA | 0.35329 |
| SARC | TCGA-DX-A1L3-01A | TCGA-DX-A1L3 | MAP2K5|C12orf28 | MAP2K5 | C12orf28 | 15 | 12 | 1 | 1 | 37 | 29 | 28 | 3.2 | 67893087 | 70272808 | tier1 | CDS-5UTR | 9841 | non-validated | 0 |
| SARC | TCGA-DX-A8BL-01A | TCGA-DX-A8BL | MAP4|RBM42 | MAP4 | RBM42 | 3 | 19 | -1 | 1 | 100 | 105 | 97 | 0.52 | 47956307 | 36124000 | tier1 | In-frame | 9894 | NA | 0.37543 |
| SARC | TCGA-DX-AB2P-01A | TCGA-DX-AB2P | MARCH3|HTR4 | MARCH3 | HTR4 | 5 | 5 | -1 | -1 | 2 | 1 | 1 | 0.038 | 126250622 | 147929825 | tier2 | Out-of-frame | 9981 | NA | 0 |
| SARC | TCGA-QC-AA9N-01A | TCGA-QC-AA9N | MARCH8|NCAM2 | MARCH8 | NCAM2 | 10 | 21 | -1 | 1 | 43 | 29 | 25 | 1.5 | 46089683 | 22696703 | tier1 | 5UTR-CDS | 9990 | NA | 0 |
| SARC | TCGA-DX-AB2V-01A | TCGA-DX-AB2V | MAX|ACTN1 | MAX | ACTN1 | 14 | 14 | -1 | -1 | 310 | 106 | 102 | 1.5 | 65560426 | 69392389 | tier1 | In-frame | 10038 | NA | 0.38123 |
| SARC | TCGA-FX-A2QS-01A | TCGA-FX-A2QS | MB21D2|CTLA4 | MB21D2 | CTLA4 | 3 | 2 | -1 | 1 | 14 | 7 | 7 | 0.82 | 192635419 | 204735309 | tier1 | In-frame | 10043 | validated | 0.3697 |
| SARC | TCGA-KF-A41W-01A | TCGA-KF-A41W | MCF2L|ATP11A | MCF2L | ATP11A | 13 | 13 | 1 | 1 | 2 | 2 | 2 | 0.17 | 113556685 | 113478658 | tier3 | In-frame | 10086 | NA | 0.37391 |
| SARC | TCGA-3B-A9HS-01A | TCGA-3B-A9HS | MDM1|INSR | MDM1 | INSR | 12 | 19 | -1 | -1 | 15 | 12 | 11 | 0.27 | 68696400 | 7152938 | tier1 | In-frame | 10116 | NA | 0.38965 |
| SARC | TCGA-FX-A3NK-01A | TCGA-FX-A3NK | MDM2|C12orf28 | MDM2 | C12orf28 | 12 | 12 | 1 | 1 | 22 | 27 | 23 | 0.067 | 69218431 | 70249060 | tier2 | CDS-5UTR | 10121 | NA | 0 |
| SARC | TCGA-WK-A8XO-01A | TCGA-WK-A8XO | MDM2|PTPRR | MDM2 | PTPRR | 12 | 12 | 1 | -1 | 5 | 4 | 4 | 0.27 | 69207408 | 71078563 | tier1 | Out-of-frame | 10128 | NA | 0.38544 |
| SARC | TCGA-DX-A3UA-01A | TCGA-DX-A3UA | MECOM|CD86 | MECOM | CD86 | 3 | 3 | -1 | 1 | 4 | 3 | 3 | 0.55 | 169381124 | 121810448 | tier1 | Out-of-frame | 10137 | NA | 0.36225 |
| SARC | TCGA-DX-A1KY-01A | TCGA-DX-A1KY | MEF2A|SV2B | MEF2A | SV2B | 15 | 15 | 1 | 1 | 16 | 6 | 6 | 0.18 | 100230633 | 91795049 | tier1 | Out-of-frame | 10235 | NA | 0.37529 |
| SARC | TCGA-DX-A7EI-01A | TCGA-DX-A7EI | MEF2D|CD55 | MEF2D | CD55 | 1 | 1 | -1 | 1 | 3 | 3 | 3 | 0.048 | 156470278 | 207532891 | tier1 | 5UTR-CDS | 10238 | NA | 0.38439 |
| SARC | TCGA-IE-A3OV-01A | TCGA-IE-A3OV | MEGF8|ITPKC | MEGF8 | ITPKC | 19 | 19 | 1 | 1 | 5 | 3 | 3 | 0.031 | 42875634 | 41231245 | tier1 | In-frame | 10242 | NA | 0.34057 |
| SARC | TCGA-WP-A9GB-01A | TCGA-WP-A9GB | MEIS2|BBS2 | MEIS2 | BBS2 | 15 | 16 | -1 | -1 | 12 | 10 | 8 | 1.3 | 37242525 | 56545196 | tier1 | Out-of-frame | 10246 | validated | 0.3537 |
| SARC | TCGA-DX-A1KZ-01A | TCGA-DX-A1KZ | METTL21B|PTPRR | METTL21B | PTPRR | 12 | 12 | 1 | -1 | 34 | 10 | 10 | 4.2 | 58166911 | 71158558 | tier1 | Out-of-frame | 10275 | NA | 0.36983 |
| SARC | TCGA-DX-A8BH-01A | TCGA-DX-A8BH | MFSD1|CLDN11 | MFSD1 | CLDN11 | 3 | 3 | 1 | 1 | 35 | 84 | 78 | 0.19 | 158531856 | 170577772 | tier1 | CDS-3UTR | 10289 | NA | 0.34559 |
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