Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-X6-A8C6-01A | TCGA-X6-A8C6 | LAMB1|NRCAM | LAMB1 | NRCAM | 7 | 7 | -1 | -1 | 21 | 15 | 12 | 0.39 | 107626467 | 107800937 | tier1 | In-frame | 9209 | NA | 0.36458 |
| SARC | TCGA-K1-A42X-01A | TCGA-K1-A42X | LATS2|MYLK | LATS2 | MYLK | 13 | 3 | -1 | -1 | 165 | 93 | 91 | 2 | 21635485 | 123386034 | tier1 | 5UTR-CDS | 9247 | NA | 0.38854 |
| SARC | TCGA-IE-A6BZ-01A | TCGA-IE-A6BZ | LDLR|TNPO2 | LDLR | TNPO2 | 19 | 19 | 1 | -1 | 12 | 3 | 3 | 0.98 | 11234020 | 12817609 | tier1 | In-frame | 9272 | NA | 0.3745 |
| SARC | TCGA-DX-A3LT-01A | TCGA-DX-A3LT | LDLRAD3|AC091196.1 | LDLRAD3 | AC091196.1 | 11 | 11 | 1 | -1 | 65 | 38 | 14 | 0.56 | 35965694 | 1502115 | tier1 | Out-of-frame | 9274 | non-validated | 0.33244 |
| SARC | TCGA-DX-A8BU-01A | TCGA-DX-A8BU | LDLRAD3|DEPDC7 | LDLRAD3 | DEPDC7 | 11 | 11 | 1 | 1 | 11 | 5 | 5 | 3.3 | 36120011 | 33054808 | tier1 | In-frame | 9276 | NA | 0.33891 |
| SARC | TCGA-DX-AB2F-01A | TCGA-DX-AB2F | LEMD3|KCNC2 | LEMD3 | KCNC2 | 12 | 12 | 1 | -1 | 58 | 37 | 34 | 0.96 | 65612399 | 75445097 | tier1 | In-frame | 9286 | NA | 0.363 |
| SARC | TCGA-SG-A6Z7-01A | TCGA-SG-A6Z7 | LGR5|FAM19A2 | LGR5 | FAM19A2 | 12 | 12 | 1 | -1 | 11 | 20 | 17 | 0.68 | 71928966 | 62261207 | tier1 | CDS-5UTR | 9314 | NA | 0.3444 |
| SARC | TCGA-DX-A7EI-01A | TCGA-DX-A7EI | LGR5|PPFIA2 | LGR5 | PPFIA2 | 12 | 12 | 1 | -1 | 4 | 2 | 2 | 0.88 | 71928966 | 81851645 | tier1 | Out-of-frame | 9315 | NA | 0.36566 |
| SARC | TCGA-DX-A6Z0-01A | TCGA-DX-A6Z0 | LMBR1|UBE3C | LMBR1 | UBE3C | 7 | 7 | -1 | 1 | 3 | 2 | 2 | 0.92 | 156685622 | 156979528 | tier1 | In-frame | 9390 | NA | 0.35293 |
| SARC | TCGA-SI-AA8B-01A | TCGA-SI-AA8B | LPP|HRASLS | LPP | HRASLS | 3 | 3 | 1 | 1 | 2 | 2 | 2 | 2.4 | 188202492 | 192973440 | tier3 | In-frame | 9462 | NA | 0.36592 |
| SARC | TCGA-DX-AB2Z-01A | TCGA-DX-AB2Z | LPP|KCNIP4 | LPP | KCNIP4 | 3 | 4 | 1 | -1 | 4 | 3 | 3 | 0.46 | 187943315 | 20852290 | tier1 | 5UTR-CDS | 9463 | NA | 0.3683 |
| SARC | TCGA-VT-A80G-01A | TCGA-VT-A80G | LRAT|NAALADL2 | LRAT | NAALADL2 | 4 | 3 | 1 | 1 | 12 | 4 | 3 | 0.071 | 155557548 | 174814580 | tier1 | NA | 9470 | NA | 0.34818 |
| SARC | TCGA-DX-A1KU-01A | TCGA-DX-A1KU | LRIG3|SLC16A7 | LRIG3 | SLC16A7 | 12 | 12 | -1 | 1 | 41 | 22 | 20 | 0.66 | 59267837 | 60165000 | tier1 | In-frame | 9502 | validated | 0.35008 |
| SARC | TCGA-MB-A8JL-01A | TCGA-MB-A8JL | LRIG3|XRCC6BP1 | LRIG3 | XRCC6BP1 | 12 | 12 | -1 | 1 | 156 | 136 | 129 | 0.18 | 59307763 | 58339411 | tier1 | Out-of-frame | 9503 | NA | 0.35371 |
| SARC | TCGA-DX-AB2G-01A | TCGA-DX-AB2G | LRP1|ATF1 | LRP1 | ATF1 | 12 | 12 | 1 | 1 | 13 | 2 | 2 | 1.2 | 57539273 | 51189692 | tier1 | Out-of-frame | 9504 | NA | 0.38868 |
| SARC | TCGA-DX-A3U6-01A | TCGA-DX-A3U6 | LRP1|CAND1 | LRP1 | CAND1 | 12 | 12 | 1 | 1 | 15 | 29 | 25 | 1.7 | 57596320 | 67686402 | tier2 | Out-of-frame | 9505 | non-validated | 0.3848 |
| SARC | TCGA-3B-A9HS-01A | TCGA-3B-A9HS | LRP1|FAM19A2 | LRP1 | FAM19A2 | 12 | 12 | 1 | -1 | 166 | 95 | 89 | 0.18 | 57569488 | 62104198 | tier1 | Out-of-frame | 9506 | NA | 0.37694 |
| SARC | TCGA-DX-AB2G-01A | TCGA-DX-AB2G | LRP1|MCRS1 | LRP1 | MCRS1 | 12 | 12 | 1 | -1 | 2722 | 1792 | 1698 | 0.29 | 57604662 | 49953604 | tier1 | In-frame | 9508 | NA | 0.38097 |
| SARC | TCGA-SG-A6Z4-01A | TCGA-SG-A6Z4 | LSAMP|CCDC58 | LSAMP | CCDC58 | 3 | 3 | -1 | -1 | 3 | 2 | 1 | 100 | 117716029 | 122081874 | tier2 | Out-of-frame | 9624 | NA | 0.35242 |
| SARC | TCGA-3B-A9HL-01A | TCGA-3B-A9HL | LTA4H|STAB2 | LTA4H | STAB2 | 12 | 12 | -1 | 1 | 2 | 1 | 1 | 2.2 | 96429139 | 104076983 | tier2 | In-frame | 9641 | NA | 0.36561 |
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