Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-DX-A1KZ-01A | TCGA-DX-A1KZ | ISCA1|WWP1 | ISCA1 | WWP1 | 9 | 8 | -1 | 1 | 9 | 16 | 15 | 1.1 | 88897293 | 87447681 | tier1 | Out-of-frame | 8350 | NA | 0.37615 |
| SARC | TCGA-PC-A5DO-01A | TCGA-PC-A5DO | ITGA10|PEX11B | ITGA10 | PEX11B | 1 | 1 | 1 | 1 | 3 | 2 | 2 | 0.093 | 145531026 | 145522514 | tier1 | In-frame | 8371 | NA | 0.35622 |
| SARC | TCGA-DX-A8BM-01A | TCGA-DX-A8BM | ITGA11|ADAMTSL3 | ITGA11 | ADAMTSL3 | 15 | 15 | -1 | 1 | 4 | 4 | 3 | 1.3 | 68606117 | 84639236 | tier1 | Out-of-frame | 8372 | NA | 0.36318 |
| SARC | TCGA-IE-A4EH-01A | TCGA-IE-A4EH | ITGA8|FAM188A | ITGA8 | FAM188A | 10 | 10 | -1 | -1 | 33 | 7 | 6 | 2.1 | 15713602 | 15889942 | tier1 | In-frame | 8386 | NA | 0.36232 |
| SARC | TCGA-VT-A80G-01A | TCGA-VT-A80G | ITGAV|ARHGAP15 | ITGAV | ARHGAP15 | 2 | 2 | 1 | 1 | 16 | 5 | 5 | 0.74 | 187534541 | 143986150 | tier1 | Out-of-frame | 8390 | NA | 0.38086 |
| SARC | TCGA-DX-A6BG-01A | TCGA-DX-A6BG | ITGB6|CNOT2 | ITGB6 | CNOT2 | 2 | 12 | -1 | 1 | 9 | 7 | 7 | 0.79 | 160964190 | 70731169 | tier1 | Out-of-frame | 8409 | NA | 0.36646 |
| SARC | TCGA-DX-A3UA-01A | TCGA-DX-A3UA | ITSN1|HNRNPUL1 | ITSN1 | HNRNPUL1 | 21 | 19 | 1 | 1 | 35 | 9 | 9 | 0.21 | 35127702 | 41808570 | tier1 | In-frame | 8461 | NA | 0.38392 |
| SARC | TCGA-DX-A1KZ-01A | TCGA-DX-A1KZ | KCNMB4|GDF3 | KCNMB4 | GDF3 | 12 | 12 | 1 | -1 | 11 | 2 | 2 | 2.5 | 70794116 | 7843300 | tier1 | Out-of-frame | 8591 | NA | 0.34159 |
| SARC | TCGA-PC-A5DN-01A | TCGA-PC-A5DN | KCNMB4|GLIPR1L2 | KCNMB4 | GLIPR1L2 | 12 | 12 | 1 | 1 | 145 | 88 | 72 | 1.5 | 70760850 | 75816684 | tier1 | Out-of-frame | 8592 | NA | 0.347 |
| SARC | TCGA-SI-A71O-01A | TCGA-SI-A71O | KDM2A|SLC5A4 | KDM2A | SLC5A4 | 11 | 22 | 1 | -1 | 3 | 5 | 3 | 0.011 | 66947688 | 32650200 | tier1 | Out-of-frame | 8643 | NA | 0.33302 |
| SARC | TCGA-3B-A9HI-01A | TCGA-3B-A9HI | KIAA0195|LRRC52 | KIAA0195 | LRRC52 | 17 | 1 | 1 | 1 | 10 | 13 | 11 | 0.92 | 73468010 | 165532742 | tier1 | Out-of-frame | 8750 | NA | 0.33358 |
| SARC | TCGA-SI-AA8B-01A | TCGA-SI-AA8B | KIAA0226L|CUBN | KIAA0226L | CUBN | 13 | 10 | -1 | -1 | 73 | 72 | 54 | 0.003 | 46961812 | 16893442 | tier1 | 5UTR-CDS | 8754 | NA | 0.36268 |
| SARC | TCGA-DX-A8BN-01A | TCGA-DX-A8BN | KIAA0355|SLC7A9 | KIAA0355 | SLC7A9 | 19 | 19 | 1 | -1 | 67 | 51 | 45 | 0.12 | 34840058 | 33324229 | tier1 | Out-of-frame | 8779 | NA | 0.34664 |
| SARC | TCGA-HB-A3YV-01A | TCGA-HB-A3YV | KIAA1244|GRIK2 | KIAA1244 | GRIK2 | 6 | 6 | 1 | 1 | 11 | 5 | 5 | 0.21 | 138601301 | 102483216 | tier1 | Out-of-frame | 8840 | NA | 0.3624 |
| SARC | TCGA-DX-A1KZ-01A | TCGA-DX-A1KZ | KIAA1467|TSPAN8 | KIAA1467 | TSPAN8 | 12 | 12 | 1 | -1 | 3 | 1 | 1 | 0.26 | 13229077 | 71676599 | tier3 | CDS-5UTR | 8883 | NA | 0.33838 |
| SARC | TCGA-3B-A9HO-01A | TCGA-3B-A9HO | KITLG|RP11-366L20.2 | KITLG | RP11-366L20.2 | 12 | 12 | -1 | -1 | 4 | 3 | 2 | 0.023 | 88898936 | 66245432 | tier1 | 3UTR-CDS | 9032 | NA | 0.36371 |
| SARC | TCGA-DX-A1L4-01A | TCGA-DX-A1L4 | KITLG|ST8SIA6 | KITLG | ST8SIA6 | 12 | 10 | -1 | -1 | 10 | 14 | 11 | 0.48 | 88974041 | 17373551 | tier1 | Out-of-frame | 9033 | NA | 0.3642 |
| SARC | TCGA-X6-A7WB-01A | TCGA-X6-A7WB | KLF12|CAMK2G | KLF12 | CAMK2G | 13 | 10 | -1 | -1 | 18 | 20 | 18 | 0.12 | 74518118 | 75577312 | tier1 | Out-of-frame | 9039 | NA | 0.38943 |
| SARC | TCGA-HB-A3YV-01A | TCGA-HB-A3YV | LAMA2|GRIK2 | LAMA2 | GRIK2 | 6 | 6 | 1 | 1 | 27 | 14 | 13 | 1.7 | 129513998 | 102124498 | tier1 | Out-of-frame | 9181 | NA | 0.3705 |
| SARC | TCGA-HB-A3YV-01A | TCGA-HB-A3YV | LAMA2|SLC11A2 | LAMA2 | SLC11A2 | 6 | 12 | 1 | -1 | 4 | 5 | 5 | 0.034 | 129513998 | 51404549 | tier1 | Out-of-frame | 9183 | NA | 0.36522 |
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