Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-SG-A849-01A | TCGA-SG-A849 | GAS7|ATP8B4 | GAS7 | ATP8B4 | 17 | 15 | -1 | -1 | 3 | 5 | 5 | 1.7 | 10101525 | 50273491 | tier1 | Out-of-frame | 6963 | NA | 0.35911 |
| SARC | TCGA-DX-A1L2-01A | TCGA-DX-A1L2 | GATAD2B|GRM8 | GATAD2B | GRM8 | 1 | 7 | -1 | -1 | 225 | 243 | 225 | 0.025 | 153895209 | 126086426 | tier1 | 5UTR-CDS | 6982 | non-validated | 0.37672 |
| SARC | TCGA-DX-A23T-01A | TCGA-DX-A23T | GBF1|TRPC6 | GBF1 | TRPC6 | 10 | 11 | 1 | -1 | 26 | 33 | 29 | 1.1 | 104005538 | 101375529 | tier1 | 5UTR-CDS | 7005 | NA | 0.37874 |
| SARC | TCGA-DX-AB2O-01A | TCGA-DX-AB2O | GLI2|MARCO | GLI2 | MARCO | 2 | 2 | 1 | 1 | 6 | 6 | 6 | 0.13 | 121555044 | 119726736 | tier1 | In-frame | 7097 | NA | 0.37351 |
| SARC | TCGA-3B-A9HS-01A | TCGA-3B-A9HS | GLIPR1|CDK17 | GLIPR1 | CDK17 | 12 | 12 | 1 | -1 | 27 | 11 | 10 | 0.87 | 75875859 | 96728643 | tier1 | CDS-5UTR | 7106 | NA | 0.33728 |
| SARC | TCGA-HB-A3YV-01A | TCGA-HB-A3YV | GNA11|TMCO3 | GNA11 | TMCO3 | 19 | 13 | 1 | 1 | 27 | 23 | 22 | 0.6 | 3094785 | 114174931 | tier1 | In-frame | 7157 | NA | 0.37473 |
| SARC | TCGA-VT-A80J-01A | TCGA-VT-A80J | GNG12|PLXNA2 | GNG12 | PLXNA2 | 1 | 1 | -1 | -1 | 3 | 2 | 2 | 6.3 | 68299027 | 208257925 | tier1 | 5UTR-CDS | 7231 | NA | 0.36809 |
| SARC | TCGA-DX-A3U5-01A | TCGA-DX-A3U5 | GNL1|REPS1 | GNL1 | REPS1 | 6 | 6 | -1 | -1 | 10 | 8 | 8 | 0.35 | 30520244 | 139242261 | tier2 | Out-of-frame | 7239 | non-validated | 0.3739 |
| SARC | TCGA-UE-A6QU-01A | TCGA-UE-A6QU | GNL3L|GABRB3 | GNL3L | GABRB3 | X | 15 | 1 | -1 | 65 | 23 | 18 | 0.14 | 54559018 | 26828561 | tier1 | Out-of-frame | 7244 | NA | 0.3677 |
| SARC | TCGA-DX-A2IZ-01A | TCGA-DX-A2IZ | GNPTAB|TRHDE | GNPTAB | TRHDE | 12 | 12 | -1 | 1 | 33 | 24 | 21 | 0.33 | 102224337 | 72680461 | tier1 | Out-of-frame | 7253 | validated | 0.35341 |
| SARC | TCGA-DX-A1KU-01A | TCGA-DX-A1KU | GNS|SLC16A7 | GNS | SLC16A7 | 12 | 12 | -1 | 1 | 4 | 3 | 3 | 0.068 | 65146478 | 60173204 | tier1 | Out-of-frame | 7258 | non-validated | 0.34409 |
| SARC | TCGA-DX-A48N-01A | TCGA-DX-A48N | GPC1|XRCC6BP1 | GPC1 | XRCC6BP1 | 2 | 12 | 1 | 1 | 15 | 8 | 7 | 0.16 | 241375501 | 58339411 | tier1 | In-frame | 7325 | NA | 0.36174 |
| SARC | TCGA-DX-A6BG-01A | TCGA-DX-A6BG | GPR161|EFTUD1 | GPR161 | EFTUD1 | 1 | 15 | -1 | -1 | 2 | 2 | 2 | 0.35 | 168105248 | 82523312 | tier2 | 5UTR-CDS | 7371 | NA | 0.35466 |
| SARC | TCGA-DX-AB3A-01A | TCGA-DX-AB3A | GPRIN1|TM2D1 | GPRIN1 | TM2D1 | 5 | 1 | -1 | -1 | 6 | 16 | 16 | 0.19 | 176037000 | 62166697 | tier1 | 5UTR-CDS | 7385 | NA | 0.35104 |
| SARC | TCGA-DX-A7EI-01A | TCGA-DX-A7EI | GRAMD1A|RAB3IP | GRAMD1A | RAB3IP | 19 | 12 | 1 | 1 | 16 | 32 | 27 | 3.4 | 35491390 | 70193989 | tier1 | Out-of-frame | 7399 | NA | 0.35386 |
| SARC | TCGA-DX-A6YR-01A | TCGA-DX-A6YR | GRID1|AFAP1L2 | GRID1 | AFAP1L2 | 10 | 10 | -1 | -1 | 5 | 3 | 2 | 0.24 | 88123698 | 116100490 | tier1 | In-frame | 7442 | NA | 0.35549 |
| SARC | TCGA-HB-A3YV-01A | TCGA-HB-A3YV | GRIK2|RNF217 | GRIK2 | RNF217 | 6 | 6 | 1 | 1 | 36 | 58 | 49 | 0.16 | 102376507 | 125366357 | tier1 | In-frame | 7451 | NA | 0.36274 |
| SARC | TCGA-HB-A3YV-01A | TCGA-HB-A3YV | GRIK2|WASF1 | GRIK2 | WASF1 | 6 | 6 | 1 | -1 | 8 | 11 | 10 | 2 | 102134228 | 110448832 | tier1 | CDS-5UTR | 7452 | NA | 0.36985 |
| SARC | TCGA-SI-A71O-01A | TCGA-SI-A71O | GRIN2A|MTHFD1L | GRIN2A | MTHFD1L | 16 | 6 | -1 | 1 | 3 | 3 | 2 | 0.044 | 10031816 | 151413603 | tier1 | Out-of-frame | 7454 | NA | 0.37794 |
| SARC | TCGA-HB-A3YV-01A | TCGA-HB-A3YV | GRIP1|TMEM5 | GRIP1 | TMEM5 | 12 | 12 | -1 | 1 | 29 | 10 | 10 | 0.36 | 66990627 | 64199014 | tier1 | Out-of-frame | 7461 | NA | 0.36432 |
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