TCSA Transcript fusion

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Transcript Fusion

The transcript fusion data of TCGA were retrieved from the TumorFusions database.

List of the transcript fusions of the GESPs in each cancer type

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Cancer Type	TCGA_barcode	Patient	Fusion_transcript	Gene_A	Gene_B	Chr_A	Chr_B	Strand_A	Strand_B	#_Discordant_Pairs	#_JSR	#_perfect_JSR	Evalue	Junction_A	Junction_B	Tier	Frame	TN	WGS_validation	Centrality
SARC	TCGA-DX-AB37-01A	TCGA-DX-AB37	FGD6\|PTPRR	FGD6	PTPRR	12	12	-1	-1	3	9	9	1.2	95483345	71033057	tier1	Out-of-frame	6441	NA	0.37894
SARC	TCGA-DX-A23V-01A	TCGA-DX-A23V	FGD6\|TBC1D30	FGD6	TBC1D30	12	12	-1	1	22	12	8	0.058	95528515	65232463	tier1	In-frame	6442	NA	0.36221
SARC	TCGA-DX-A23U-01A	TCGA-DX-A23U	FGGY\|ATP2B4	FGGY	ATP2B4	1	1	1	1	18	10	8	0.054	59922748	203676990	tier1	Out-of-frame	6514	NA	0.37497
SARC	TCGA-3B-A9HR-01A	TCGA-3B-A9HR	FNDC3A\|LPAR6	FNDC3A	LPAR6	13	13	1	-1	21	13	12	0.64	49688867	48991456	tier1	CDS-5UTR	6602	NA	0.33474
SARC	TCGA-DX-A7EI-01A	TCGA-DX-A7EI	FRS2\|ACSS3	FRS2	ACSS3	12	12	1	1	85	64	50	0.097	69864310	81528595	tier1	5UTR-CDS	6738	NA	0.37785
SARC	TCGA-DX-A6BH-01A	TCGA-DX-A6BH	FRS2\|AKAP12	FRS2	AKAP12	12	6	1	1	72	67	63	0.049	69925836	151626882	tier1	5UTR-CDS	6739	NA	0.37758
SARC	TCGA-DX-A1L3-01A	TCGA-DX-A1L3	FRS2\|ATXN1	FRS2	ATXN1	12	6	1	-1	127	23	23	0.21	69864310	16522919	tier1	5UTR-5UTR	6740	validated	0.3782
SARC	TCGA-3B-A9HO-01A	TCGA-3B-A9HO	FRS2\|AVIL	FRS2	AVIL	12	12	1	-1	591	465	29	0.72	69931763	58193703	tier1	5UTR-CDS	6741	NA	0.37791
SARC	TCGA-DX-A3M1-01A	TCGA-DX-A3M1	FRS2\|C12orf63	FRS2	C12orf63	12	12	1	1	309	108	88	0.69	69864310	97098521	tier1	5UTR-CDS	6743	validated	0
SARC	TCGA-DX-AB2F-01A	TCGA-DX-AB2F	FRS2\|C12orf63	FRS2	C12orf63	12	12	1	1	11	8	7	0.69	69931763	96934615	tier1	5UTR-CDS	6744	NA	0
SARC	TCGA-DX-A2J4-01A	TCGA-DX-A2J4	FRS2\|C12orf66	FRS2	C12orf66	12	12	1	-1	14	8	8	2.3	69864310	64609743	tier1	5UTR-CDS	6745	non-validated	0
SARC	TCGA-DX-A6BF-01A	TCGA-DX-A6BF	FRS2\|C1orf141	FRS2	C1orf141	12	1	1	-1	2	2	2	0.025	69931763	67577327	tier2	NA	6746	NA	0
SARC	TCGA-DX-A3LY-01B	TCGA-DX-A3LY	FRS2\|CHMP1A	FRS2	CHMP1A	12	16	1	-1	4	2	2	0.61	69864310	89713739	tier2	5UTR-CDS	6747	non-validated	0.37945
SARC	TCGA-DX-A2IZ-01A	TCGA-DX-A2IZ	FRS2\|CPM	FRS2	CPM	12	12	1	-1	194	52	37	0.13	69864310	69279669	tier1	5UTR-CDS	6748	validated	0.37742
SARC	TCGA-FX-A3NK-01A	TCGA-FX-A3NK	FRS2\|DNM2	FRS2	DNM2	12	19	1	1	124	49	44	0.009	69864310	10904396	tier1	5UTR-CDS	6749	NA	0.38349
SARC	TCGA-3B-A9HJ-01A	TCGA-3B-A9HJ	FRS2\|EMR1	FRS2	EMR1	12	19	1	1	13	3	2	0.018	69864310	6928156	tier1	5UTR-CDS	6752	NA	0.37773
SARC	TCGA-3B-A9HJ-01A	TCGA-3B-A9HJ	FRS2\|FBRSL1	FRS2	FBRSL1	12	12	1	1	4	2	2	0.39	69864310	133124589	tier1	5UTR-CDS	6753	NA	0.37412
SARC	TCGA-DX-A6BF-01A	TCGA-DX-A6BF	FRS2\|GLIPR1L2	FRS2	GLIPR1L2	12	12	1	1	63	40	38	0.18	69864310	75816684	tier1	5UTR-CDS	6754	NA	0.37937
SARC	TCGA-DX-A3M1-01A	TCGA-DX-A3M1	FRS2\|HMGA2	FRS2	HMGA2	12	12	1	1	2	34	31	0.57	69864310	66232299	tier2	5UTR-CDS	6756	validated	0.38349
SARC	TCGA-DX-A3U5-01A	TCGA-DX-A3U5	FRS2\|KIF5A	FRS2	KIF5A	12	12	1	1	10	4	3	0.41	69931763	57957222	tier1	5UTR-CDS	6758	non-validated	0.3817

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