Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-DX-A1L0-01A | TCGA-DX-A1L0 | EML1|BASP1 | EML1 | BASP1 | 14 | 5 | 1 | 1 | 6 | 2 | 2 | 100 | 100317372 | 17275317 | tier1 | CDS-5UTR | 5548 | validated | 0.36003 |
| SARC | TCGA-RN-AAAQ-01A | TCGA-RN-AAAQ | EML1|GPI | EML1 | GPI | 14 | 19 | 1 | 1 | 9 | 12 | 10 | 0.061 | 100259880 | 34884153 | tier1 | Out-of-frame | 5552 | NA | 0.3606 |
| SARC | TCGA-3B-A9HS-01A | TCGA-3B-A9HS | ENPP1|INSR | ENPP1 | INSR | 6 | 19 | 1 | -1 | 5 | 4 | 4 | 2.4 | 132129415 | 7152938 | tier1 | Out-of-frame | 5597 | NA | 0.38976 |
| SARC | TCGA-DX-A48N-01A | TCGA-DX-A48N | ENTPD5|TSHR | ENTPD5 | TSHR | 14 | 14 | -1 | 1 | 2 | 5 | 5 | 0.95 | 74453517 | 81558875 | tier2 | Out-of-frame | 5603 | NA | 0.37921 |
| SARC | TCGA-QC-A6FX-01A | TCGA-QC-A6FX | EPB41L2|C6orf103 | EPB41L2 | C6orf103 | 6 | 6 | -1 | 1 | 4 | 4 | 4 | 0.25 | 131384295 | 146956511 | tier1 | 5UTR-CDS | 5647 | NA | 0 |
| SARC | TCGA-IF-A3RQ-01A | TCGA-IF-A3RQ | EPB41L2|PTPRK | EPB41L2 | PTPRK | 6 | 6 | -1 | -1 | 3 | 7 | 4 | 0.024 | 131276245 | 128330413 | tier1 | Out-of-frame | 5650 | NA | 0.37529 |
| SARC | TCGA-DX-A23R-01A | TCGA-DX-A23R | EPHB3|PAX2 | EPHB3 | PAX2 | 3 | 10 | 1 | 1 | 9 | 5 | 4 | 0.004 | 184290964 | 102566187 | tier1 | In-frame | 5680 | non-validated | 0.38543 |
| SARC | TCGA-QQ-A5VC-01A | TCGA-QQ-A5VC | ERC1|MRPS9 | ERC1 | MRPS9 | 12 | 2 | 1 | 1 | 136 | 47 | 44 | 0.5 | 1481143 | 105716128 | tier1 | Out-of-frame | 5749 | NA | 0.36176 |
| SARC | TCGA-3B-A9HV-01A | TCGA-3B-A9HV | ETV1|CACNA2D1 | ETV1 | CACNA2D1 | 7 | 7 | -1 | -1 | 54 | 28 | 24 | 0.52 | 14017052 | 81695840 | tier1 | In-frame | 5858 | NA | 0.37622 |
| SARC | TCGA-DX-A23Y-01A | TCGA-DX-A23Y | ETV6|EPB41L2 | ETV6 | EPB41L2 | 12 | 6 | 1 | -1 | 9 | 8 | 8 | 0.36 | 11803094 | 131222320 | tier1 | Out-of-frame | 5866 | NA | 0.37631 |
| SARC | TCGA-HB-A3YV-01A | TCGA-HB-A3YV | EVC2|CPM | EVC2 | CPM | 4 | 12 | -1 | -1 | 3 | 2 | 2 | 1.1 | 5710013 | 69236109 | tier1 | NA | 5882 | NA | 0.34697 |
| SARC | TCGA-DX-AATS-01A | TCGA-DX-AATS | FAM120A|SUSD1 | FAM120A | SUSD1 | 9 | 9 | 1 | -1 | 9 | 4 | 4 | 2 | 96289524 | 114804240 | tier1 | Out-of-frame | 6022 | NA | 0.35072 |
| SARC | TCGA-DX-A3UF-01A | TCGA-DX-A3UF | FAM126B|COQ10B | FAM126B | COQ10B | 2 | 2 | -1 | 1 | 12 | 7 | 6 | 0.32 | 201910219 | 198324656 | tier1 | 5UTR-CDS | 6032 | NA | 0.33531 |
| SARC | TCGA-MB-A8JL-01A | TCGA-MB-A8JL | FAM38A|KLHDC4 | FAM38A | KLHDC4 | 16 | 16 | -1 | -1 | 7 | 3 | 2 | 0.044 | 88815792 | 87795646 | tier1 | Out-of-frame | 6170 | NA | 0.34805 |
| SARC | TCGA-X6-A7W8-01A | TCGA-X6-A7W8 | FAM38B|IMPA2 | FAM38B | IMPA2 | 18 | 18 | -1 | 1 | 14 | 9 | 8 | 0.54 | 10672687 | 12030342 | tier2 | Out-of-frame | 6174 | NA | 0.34613 |
| SARC | TCGA-SI-A71O-06A | TCGA-SI-A71O | FAM48A|ATP8A2 | FAM48A | ATP8A2 | 13 | 13 | -1 | 1 | 43 | 17 | 16 | 0.28 | 37633696 | 26343184 | tier1 | 5UTR-CDS | 6176 | NA | 0.3509 |
| SARC | TCGA-FX-A2QS-01A | TCGA-FX-A2QS | FAM70A|FPR2 | FAM70A | FPR2 | X | 19 | -1 | 1 | 4 | 2 | 2 | 0.92 | 119438204 | 52271898 | tier1 | CDS-5UTR | 6201 | non-validated | 0.34827 |
| SARC | TCGA-DX-A7EI-01A | TCGA-DX-A7EI | FBXL7|CDH10 | FBXL7 | CDH10 | 5 | 5 | 1 | -1 | 25 | 17 | 15 | 0.16 | 15616181 | 24593722 | tier1 | CDS-5UTR | 6332 | NA | 0.36001 |
| SARC | TCGA-DX-A8BG-01A | TCGA-DX-A8BG | FER|COMMD10 | FER | COMMD10 | 5 | 5 | 1 | 1 | 6 | 8 | 8 | 0.63 | 108171508 | 115627214 | tier1 | Out-of-frame | 6419 | NA | 0.38163 |
| SARC | TCGA-DX-A3LS-01A | TCGA-DX-A3LS | FGD5|SLC6A6 | FGD5 | SLC6A6 | 3 | 3 | 1 | 1 | 16 | 6 | 6 | 0.031 | 14863103 | 14526375 | tier1 | Out-of-frame | 6439 | validated | 0.35117 |
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