Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-3R-A8YX-01A | TCGA-3R-A8YX | DENND1B|CRB1 | DENND1B | CRB1 | 1 | 1 | -1 | 1 | 3 | 2 | 2 | 0.18 | 197509094 | 197390130 | tier1 | NA | 4703 | NA | 0.35847 |
| SARC | TCGA-DX-A1KU-01A | TCGA-DX-A1KU | DENND1B|TSPAN31 | DENND1B | TSPAN31 | 1 | 12 | -1 | 1 | 73 | 42 | 40 | 0.85 | 197741998 | 58140372 | tier1 | Out-of-frame | 4708 | non-validated | 0.34683 |
| SARC | TCGA-DX-A8BS-01A | TCGA-DX-A8BS | DLG1|CBFA2T2 | DLG1 | CBFA2T2 | 3 | 20 | -1 | 1 | 28 | 32 | 32 | 4.9 | 197009550 | 32232153 | tier1 | In-frame | 4871 | NA | 0.3794 |
| SARC | TCGA-DX-A8BH-01A | TCGA-DX-A8BH | DLG1|FAIM | DLG1 | FAIM | 3 | 3 | -1 | 1 | 22 | 7 | 7 | 1 | 196921296 | 138340249 | tier1 | Out-of-frame | 4873 | NA | 0.37525 |
| SARC | TCGA-DX-AATS-01A | TCGA-DX-AATS | DLG1|WDR60 | DLG1 | WDR60 | 3 | 7 | -1 | 1 | 12 | 5 | 5 | 2.4 | 196807922 | 158711431 | tier1 | In-frame | 4879 | NA | 0.37762 |
| SARC | TCGA-DX-AB2H-01A | TCGA-DX-AB2H | DLG2|XRCC6BP1 | DLG2 | XRCC6BP1 | 11 | 12 | -1 | 1 | 15 | 15 | 13 | 4.2 | 83874504 | 58339411 | tier1 | Out-of-frame | 4881 | NA | 0.37894 |
| SARC | TCGA-KD-A5QU-01A | TCGA-KD-A5QU | DLG4|KRT8 | DLG4 | KRT8 | 17 | 12 | -1 | -1 | 34 | 29 | 28 | 0.33 | 7120437 | 53298811 | tier1 | CDS-5UTR | 4886 | NA | 0.38392 |
| SARC | TCGA-DX-A1KY-01A | TCGA-DX-A1KY | DMD|LIX1L | DMD | LIX1L | X | 1 | -1 | 1 | 5 | 8 | 8 | 0.57 | 31279072 | 145487304 | tier1 | In-frame | 4908 | NA | 0.36997 |
| SARC | TCGA-DX-A240-01A | TCGA-DX-A240 | DMD|TMEM117 | DMD | TMEM117 | X | 12 | -1 | 1 | 2 | 2 | 2 | 0.4 | 32536125 | 44605073 | tier2 | In-frame | 4909 | validated | 0.36938 |
| SARC | TCGA-SI-A71O-06A | TCGA-SI-A71O | DNM2|ARHGEF7 | DNM2 | ARHGEF7 | 19 | 13 | 1 | 1 | 15 | 19 | 19 | 3.9 | 10930765 | 111953095 | tier1 | Out-of-frame | 4969 | NA | 0.38637 |
| SARC | TCGA-FX-A3NK-01A | TCGA-FX-A3NK | DNM2|PTH2R | DNM2 | PTH2R | 19 | 2 | 1 | 1 | 4 | 12 | 10 | 0.55 | 10829079 | 209292926 | tier1 | Out-of-frame | 4980 | NA | 0.37908 |
| SARC | TCGA-DX-A6BH-01A | TCGA-DX-A6BH | DNM3|SHISA9 | DNM3 | SHISA9 | 1 | 16 | 1 | 1 | 12 | 8 | 7 | 0.32 | 172222822 | 13328887 | tier1 | Out-of-frame | 4995 | NA | 0.35517 |
| SARC | TCGA-SG-A849-01A | TCGA-SG-A849 | DOCK7|ADAM32 | DOCK7 | ADAM32 | 1 | 8 | -1 | 1 | 7 | 2 | 2 | 0.66 | 63018403 | 39080559 | tier1 | In-frame | 5043 | NA | 0.35906 |
| SARC | TCGA-SI-A71O-01A | TCGA-SI-A71O | DSE|GRIN2A | DSE | GRIN2A | 6 | 16 | 1 | -1 | 3 | 1 | 1 | 0.63 | 116692284 | 10032408 | tier3 | 5UTR-CDS | 5123 | NA | 0.37514 |
| SARC | TCGA-DX-A3U6-01A | TCGA-DX-A3U6 | DYRK2|CNTN2 | DYRK2 | CNTN2 | 12 | 1 | 1 | 1 | 28 | 9 | 8 | 2.6 | 68043725 | 205022228 | tier1 | CDS-5UTR | 5237 | validated | 0.38072 |
| SARC | TCGA-FX-A2QS-01A | TCGA-FX-A2QS | E2F7|PTPRR | E2F7 | PTPRR | 12 | 12 | -1 | -1 | 6 | 2 | 2 | 0.059 | 77426830 | 71158558 | tier1 | Out-of-frame | 5245 | non-validated | 0.37486 |
| SARC | TCGA-DX-A3M1-01A | TCGA-DX-A3M1 | EDA|TEX11 | EDA | TEX11 | X | X | 1 | -1 | 21 | 18 | 13 | 0.59 | 68836548 | 70093157 | tier1 | In-frame | 5267 | validated | 0.36316 |
| SARC | TCGA-DX-A8BR-01A | TCGA-DX-A8BR | EEFSEC|CD96 | EEFSEC | CD96 | 3 | 3 | 1 | 1 | 2 | 2 | 2 | 1.2 | 127983624 | 111286370 | tier2 | Out-of-frame | 5328 | NA | 0.34919 |
| SARC | TCGA-DX-AB2F-01A | TCGA-DX-AB2F | ELK3|PTPRR | ELK3 | PTPRR | 12 | 12 | 1 | -1 | 15 | 23 | 20 | 1.8 | 96588483 | 71033057 | tier1 | 5UTR-CDS | 5504 | NA | 0.37842 |
| SARC | TCGA-DX-AB2F-01A | TCGA-DX-AB2F | ELK3|TSPAN8 | ELK3 | TSPAN8 | 12 | 12 | 1 | -1 | 1267 | 792 | 729 | 0.005 | 96588483 | 71676599 | tier1 | 5UTR-5UTR | 5506 | NA | 0.37072 |
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