Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-DX-A240-01A | TCGA-DX-A240 | CPNE8|PRMT8 | CPNE8 | PRMT8 | 12 | 12 | -1 | 1 | 3 | 5 | 5 | 3.6 | 39266806 | 3649772 | tier1 | In-frame | 4139 | validated | 0.35439 |
| SARC | TCGA-DX-A23T-01A | TCGA-DX-A23T | CPSF6|CPM | CPSF6 | CPM | 12 | 12 | 1 | -1 | 160 | 536 | 511 | 1.6 | 69633486 | 69252851 | tier1 | Out-of-frame | 4154 | NA | 0.36424 |
| SARC | TCGA-DX-A6BH-01A | TCGA-DX-A6BH | CPSF6|GRM8 | CPSF6 | GRM8 | 12 | 7 | 1 | -1 | 18 | 24 | 24 | 0.023 | 69656342 | 126746766 | tier1 | 3UTR-CDS | 4155 | NA | 0.37269 |
| SARC | TCGA-DX-A23Y-01A | TCGA-DX-A23Y | CPSF6|TSPAN31 | CPSF6 | TSPAN31 | 12 | 12 | 1 | 1 | 1033 | 1212 | 1115 | 0.066 | 69633486 | 58140372 | tier1 | In-frame | 4164 | NA | 0.36254 |
| SARC | TCGA-DX-A3M2-01A | TCGA-DX-A3M2 | CRAMP1L|TMEM204 | CRAMP1L | TMEM204 | 16 | 16 | 1 | 1 | 8 | 32 | 31 | 0.26 | 1676167 | 1604783 | tier1 | Out-of-frame | 4184 | NA | 0.3381 |
| SARC | TCGA-DX-A1L2-01A | TCGA-DX-A1L2 | CREB3L4|FCER1A | CREB3L4 | FCER1A | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 0.072 | 153941931 | 159272644 | tier2 | Out-of-frame | 4195 | validated | 0.36529 |
| SARC | TCGA-WK-A8XS-01A | TCGA-WK-A8XS | CRYL1|MLNR | CRYL1 | MLNR | 13 | 13 | -1 | 1 | 10 | 3 | 3 | 0.077 | 21099893 | 49796176 | tier1 | Out-of-frame | 4251 | NA | 0.35521 |
| SARC | TCGA-DX-A3M1-01A | TCGA-DX-A3M1 | CSMD3|ADCY8 | CSMD3 | ADCY8 | 8 | 8 | -1 | -1 | 2 | 3 | 2 | 0.23 | 114290821 | 131964244 | tier2 | Out-of-frame | 4275 | validated | 0.35727 |
| SARC | TCGA-FX-A3TO-01A | TCGA-FX-A3TO | CSPG4|MYO1D | CSPG4 | MYO1D | 15 | 17 | -1 | -1 | 3 | 1 | 1 | 0.01 | 76005009 | 31082680 | tier2 | Out-of-frame | 4295 | NA | 0.38022 |
| SARC | TCGA-DX-A3UA-01A | TCGA-DX-A3UA | CTD-2368P22.1|LRP3 | CTD-2368P22.1 | LRP3 | 19 | 19 | 1 | 1 | 29 | 9 | 7 | 0.02 | 58514414 | 33687636 | tier1 | Out-of-frame | 4319 | NA | 0.34255 |
| SARC | TCGA-DX-A6YS-01A | TCGA-DX-A6YS | CTNNA1|C5orf32 | CTNNA1 | C5orf32 | 5 | 5 | 1 | 1 | 26 | 22 | 18 | 2.2 | 138119061 | 139622890 | tier1 | In-frame | 4346 | NA | 0 |
| SARC | TCGA-DX-A8BK-01A | TCGA-DX-A8BK | CTNS|OLFM2 | CTNS | OLFM2 | 17 | 19 | 1 | -1 | 3 | 1 | 1 | 2.3 | 3543561 | 9971470 | tier2 | Out-of-frame | 4386 | NA | 0.35989 |
| SARC | TCGA-DX-AB3A-01A | TCGA-DX-AB3A | CUEDC1|LRP8 | CUEDC1 | LRP8 | 17 | 1 | -1 | -1 | 7 | 7 | 7 | 0.35 | 55956972 | 53746387 | tier1 | Out-of-frame | 4428 | NA | 0.3734 |
| SARC | TCGA-KD-A5QU-01A | TCGA-KD-A5QU | DACH1|TNFSF11 | DACH1 | TNFSF11 | 13 | 13 | -1 | 1 | 9 | 2 | 1 | 0.12 | 72204688 | 43180633 | tier2 | In-frame | 4536 | NA | 0.37782 |
| SARC | TCGA-FX-A2QS-01A | TCGA-FX-A2QS | DAP|SEMA5A | DAP | SEMA5A | 5 | 5 | -1 | -1 | 67 | 40 | 38 | 3.4 | 10761126 | 9066758 | tier1 | Out-of-frame | 4546 | validated | 0.36463 |
| SARC | TCGA-FX-A2QS-01A | TCGA-FX-A2QS | DCAF6|HMCN1 | DCAF6 | HMCN1 | 1 | 1 | 1 | 1 | 43 | 32 | 26 | 2.2 | 168014465 | 185815158 | tier1 | Out-of-frame | 4578 | non-validated | 0.34108 |
| SARC | TCGA-3B-A9HL-01A | TCGA-3B-A9HL | DCBLD1|CCT2 | DCBLD1 | CCT2 | 6 | 12 | 1 | 1 | 577 | 499 | 449 | 0.98 | 117825142 | 69985839 | tier2 | In-frame | 4593 | NA | 0.36966 |
| SARC | TCGA-DX-A8BV-01A | TCGA-DX-A8BV | DCLK1|CLDN10 | DCLK1 | CLDN10 | 13 | 13 | -1 | 1 | 20 | 12 | 10 | 2.2 | 36686006 | 96212386 | tier1 | Out-of-frame | 4601 | NA | 0.3588 |
| SARC | TCGA-KF-A41W-01A | TCGA-KF-A41W | DCUN1D2|ATP11A | DCUN1D2 | ATP11A | 13 | 13 | -1 | 1 | 19 | 15 | 14 | 2.9 | 114134890 | 113439449 | tier1 | Out-of-frame | 4618 | NA | 0.34829 |
| SARC | TCGA-3B-A9HO-01A | TCGA-3B-A9HO | DDR2|CHD1L | DDR2 | CHD1L | 1 | 1 | 1 | 1 | 9 | 5 | 5 | 0.34 | 162625164 | 146724278 | tier1 | 5UTR-CDS | 4641 | NA | 0.38278 |
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