Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
| Showing page 249 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-DX-A3LS-01A | TCGA-DX-A3LS | CHCHD3|CSMD1 | CHCHD3 | CSMD1 | 7 | 8 | -1 | -1 | 3 | 5 | 4 | 0.68 | 132570422 | 3205683 | tier1 | Out-of-frame | 3603 | validated | 0.35665 |
| SARC | TCGA-DX-A23R-01A | TCGA-DX-A23R | CHD4|CPM | CHD4 | CPM | 12 | 12 | -1 | -1 | 404 | 306 | 285 | 0.45 | 6700632 | 69265736 | tier1 | Out-of-frame | 3620 | non-validated | 0.37511 |
| SARC | TCGA-DX-A2IZ-01A | TCGA-DX-A2IZ | CHST11|PTPRR | CHST11 | PTPRR | 12 | 12 | 1 | -1 | 41 | 18 | 16 | 2.5 | 104995769 | 71158558 | tier1 | In-frame | 3710 | validated | 0.3714 |
| SARC | TCGA-IE-A3OV-01A | TCGA-IE-A3OV | CIZ1|SLC16A3 | CIZ1 | SLC16A3 | 9 | 17 | -1 | 1 | 5 | 2 | 2 | 0.23 | 130938630 | 80193859 | tier1 | CDS-5UTR | 3742 | NA | 0.35998 |
| SARC | TCGA-3B-A9HL-01A | TCGA-3B-A9HL | CLEC2B|C12orf28 | CLEC2B | C12orf28 | 12 | 12 | -1 | 1 | 34 | 24 | 22 | 2.3 | 10021804 | 70345893 | tier4 | 5UTR-CDS | 3782 | NA | 0 |
| SARC | TCGA-WP-A9GB-01A | TCGA-WP-A9GB | CLPTM1|PVRL2 | CLPTM1 | PVRL2 | 19 | 19 | 1 | 1 | 10 | 10 | 9 | 0.021 | 45458724 | 45368528 | tier1 | Out-of-frame | 3844 | validated | 0.36848 |
| SARC | TCGA-X6-A8C2-01A | TCGA-X6-A8C2 | CLTC|DNAH17 | CLTC | DNAH17 | 17 | 17 | 1 | -1 | 49 | 39 | 37 | 0.026 | 57697534 | 76511104 | tier1 | In-frame | 3861 | NA | 0.37005 |
| SARC | TCGA-HB-A3YV-01A | TCGA-HB-A3YV | CNKSR3|PLP1 | CNKSR3 | PLP1 | 6 | X | -1 | 1 | 2 | 4 | 4 | 4.5 | 154831197 | 103031781 | tier2 | CDS-5UTR | 3907 | NA | 0.34729 |
| SARC | TCGA-3B-A9HS-01A | TCGA-3B-A9HS | CNOT6|TSPAN8 | CNOT6 | TSPAN8 | 5 | 12 | 1 | -1 | 5 | 7 | 5 | 0.34 | 179980471 | 71551567 | tier1 | CDS-5UTR | 3938 | NA | 0.35714 |
| SARC | TCGA-QC-AA9N-01A | TCGA-QC-AA9N | CNTN1|TMEM117 | CNTN1 | TMEM117 | 12 | 12 | 1 | 1 | 3 | 1 | 1 | 0.041 | 41423021 | 44770378 | tier2 | Out-of-frame | 3950 | NA | 0.3721 |
| SARC | TCGA-DX-A3U6-01A | TCGA-DX-A3U6 | CNTN2|PKP1 | CNTN2 | PKP1 | 1 | 1 | 1 | 1 | 50 | 13 | 9 | 0.13 | 205022383 | 201263070 | tier1 | In-frame | 3952 | non-validated | 0.37291 |
| SARC | TCGA-DX-A8BL-01A | TCGA-DX-A8BL | COPE|TMED1 | COPE | TMED1 | 19 | 19 | -1 | -1 | 25 | 31 | 29 | 0.015 | 19023793 | 10946029 | tier1 | In-frame | 4061 | NA | 0.35674 |
| SARC | TCGA-DX-A3M1-01A | TCGA-DX-A3M1 | CPD|TMEM132E | CPD | TMEM132E | 17 | 17 | 1 | 1 | 5 | 2 | 2 | 1.4 | 28712254 | 32953146 | tier1 | In-frame | 4114 | non-validated | 0.33609 |
| SARC | TCGA-DX-A1L0-01A | TCGA-DX-A1L0 | CPM|AVIL | CPM | AVIL | 12 | 12 | -1 | -1 | 2 | 1 | 1 | 0.7 | 69326458 | 58194995 | tier2 | Out-of-frame | 4121 | non-validated | 0.35681 |
| SARC | TCGA-FX-A3NK-01A | TCGA-FX-A3NK | CPM|BEST3 | CPM | BEST3 | 12 | 12 | -1 | -1 | 50 | 45 | 36 | 0.84 | 69326458 | 70049593 | tier1 | Out-of-frame | 4122 | NA | 0.34579 |
| SARC | TCGA-FX-A3NK-01A | TCGA-FX-A3NK | CPM|C12orf28 | CPM | C12orf28 | 12 | 12 | -1 | 1 | 474 | 290 | 271 | 0.74 | 69326458 | 70345893 | tier1 | In-frame | 4123 | NA | 0 |
| SARC | TCGA-FX-A3RE-01A | TCGA-FX-A3RE | CPM|C12orf28 | CPM | C12orf28 | 12 | 12 | -1 | 1 | 2 | 1 | 1 | 0.74 | 69326458 | 70345893 | tier3 | In-frame | 4124 | non-validated | 0 |
| SARC | TCGA-FX-A3TO-01A | TCGA-FX-A3TO | CPM|C12orf28 | CPM | C12orf28 | 12 | 12 | -1 | 1 | 2 | 1 | 1 | 0.74 | 69326458 | 70345893 | tier3 | In-frame | 4125 | NA | 0 |
| SARC | TCGA-DX-A1KU-01A | TCGA-DX-A1KU | CPM|CCT2 | CPM | CCT2 | 12 | 12 | -1 | 1 | 60 | 39 | 37 | 1.8 | 69279572 | 69986756 | tier1 | In-frame | 4126 | non-validated | 0.36834 |
| SARC | TCGA-SG-A6Z7-01A | TCGA-SG-A6Z7 | CPM|DNM3 | CPM | DNM3 | 12 | 1 | -1 | 1 | 9 | 3 | 2 | 0.52 | 69326458 | 172277868 | tier1 | Out-of-frame | 4127 | NA | 0.36041 |
|
Showing page 249 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.