Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
| Showing page 248 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-DX-A23R-01A | TCGA-DX-A23R | CACNA1C|TSPAN8 | CACNA1C | TSPAN8 | 12 | 12 | 1 | -1 | 8 | 7 | 6 | 0.69 | 2229596 | 71676599 | tier1 | CDS-5UTR | 2859 | validated | 0.3637 |
| SARC | TCGA-K1-A6RT-01A | TCGA-K1-A6RT | CACNA2D1|PTPN12 | CACNA2D1 | PTPN12 | 7 | 7 | -1 | 1 | 4 | 2 | 2 | 0.92 | 81964451 | 77200395 | tier1 | In-frame | 2868 | NA | 0.37142 |
| SARC | TCGA-X6-A8C6-01A | TCGA-X6-A8C6 | CASC4|LRRC8D | CASC4 | LRRC8D | 15 | 1 | 1 | 1 | 9 | 9 | 9 | 0.046 | 44630515 | 90398626 | tier1 | CDS-5UTR | 3010 | NA | 0.34511 |
| SARC | TCGA-DX-A8BL-01A | TCGA-DX-A8BL | CCDC50|LSAMP | CCDC50 | LSAMP | 3 | 3 | 1 | -1 | 21 | 12 | 10 | 0.52 | 191087825 | 116163802 | tier1 | In-frame | 3143 | NA | 0.34942 |
| SARC | TCGA-DX-A6YS-01A | TCGA-DX-A6YS | CCDC73|SLC15A4 | CCDC73 | SLC15A4 | 11 | 12 | -1 | -1 | 3 | 1 | 1 | 0.01 | 32815895 | 129283962 | tier2 | 5UTR-CDS | 3179 | NA | 0.34695 |
| SARC | TCGA-DX-A48N-01A | TCGA-DX-A48N | CCDC91|PTK2 | CCDC91 | PTK2 | 12 | 8 | 1 | -1 | 8 | 5 | 5 | 0.48 | 28605587 | 141696793 | tier1 | In-frame | 3196 | NA | 0.38714 |
| SARC | TCGA-DX-A8BS-01A | TCGA-DX-A8BS | CCDC91|TRDN | CCDC91 | TRDN | 12 | 6 | 1 | -1 | 2 | 1 | 1 | 0.038 | 28515448 | 123595815 | tier2 | Out-of-frame | 3198 | NA | 0.35212 |
| SARC | TCGA-DX-A6BG-01A | TCGA-DX-A6BG | CCT2|CACNG3 | CCT2 | CACNG3 | 12 | 16 | 1 | 1 | 381 | 554 | 516 | 0.24 | 69979304 | 24372673 | tier1 | Out-of-frame | 3244 | NA | 0.36818 |
| SARC | TCGA-DX-A3LS-01A | TCGA-DX-A3LS | CCT2|KCNC2 | CCT2 | KCNC2 | 12 | 12 | 1 | -1 | 36 | 20 | 20 | 1.5 | 69980124 | 75437593 | tier1 | Out-of-frame | 3249 | non-validated | 0.36975 |
| SARC | TCGA-X6-A8C6-01A | TCGA-X6-A8C6 | CD44|EXT2 | CD44 | EXT2 | 11 | 11 | 1 | 1 | 32 | 48 | 45 | 0.56 | 35160917 | 44265699 | tier1 | Out-of-frame | 3273 | NA | 0.3739 |
| SARC | TCGA-DX-A3LY-01B | TCGA-DX-A3LY | CD55|RGS21 | CD55 | RGS21 | 1 | 1 | 1 | 1 | 28 | 21 | 20 | 0.05 | 207512762 | 192335051 | tier1 | Out-of-frame | 3281 | non-validated | 0.36872 |
| SARC | TCGA-SI-A71Q-01A | TCGA-SI-A71Q | CD83|EHF | CD83 | EHF | 6 | 11 | 1 | 1 | 4 | 8 | 7 | 0.96 | 14118296 | 34664175 | tier1 | CDS-5UTR | 3307 | NA | 0.35885 |
| SARC | TCGA-DX-A1L2-01A | TCGA-DX-A1L2 | CDH12|ZDHHC11 | CDH12 | ZDHHC11 | 5 | 5 | -1 | -1 | 2 | 3 | 3 | 1.3 | 22212607 | 825366 | tier3 | 5UTR-CDS | 3381 | non-validated | 0.35182 |
| SARC | TCGA-DX-A1L3-01A | TCGA-DX-A1L3 | CDH18|RP11-362K2.2 | CDH18 | RP11-362K2.2 | 5 | 12 | -1 | 1 | 64 | 25 | 25 | 0.18 | 19981169 | 59206196 | tier1 | 5UTR-CDS | 3384 | validated | 0.35363 |
| SARC | TCGA-DX-AB2G-01A | TCGA-DX-AB2G | CDH18|TERT | CDH18 | TERT | 5 | 5 | -1 | -1 | 4 | 4 | 4 | 0.51 | 19612543 | 1282739 | tier1 | In-frame | 3385 | NA | 0.37296 |
| SARC | TCGA-MJ-A68H-01A | TCGA-MJ-A68H | CDH2|EPB41L3 | CDH2 | EPB41L3 | 18 | 18 | -1 | -1 | 34 | 18 | 15 | 2.5 | 25727637 | 5489193 | tier1 | CDS-5UTR | 3386 | NA | 0.3761 |
| SARC | TCGA-DX-AB2F-01A | TCGA-DX-AB2F | CDH4|FGF16 | CDH4 | FGF16 | 20 | X | 1 | 1 | 5 | 1 | 1 | 0.45 | 60470103 | 76709648 | tier2 | NA | 3392 | NA | 0.35833 |
| SARC | TCGA-DX-A8BJ-01A | TCGA-DX-A8BJ | CDK13|ADCY1 | CDK13 | ADCY1 | 7 | 7 | 1 | 1 | 2 | 1 | 1 | 3.3 | 39991451 | 45649978 | tier2 | Out-of-frame | 3411 | NA | 0.34922 |
| SARC | TCGA-DX-A7EF-01A | TCGA-DX-A7EF | CEP72|CDH9 | CEP72 | CDH9 | 5 | 5 | 1 | -1 | 8 | 2 | 2 | 0.27 | 639339 | 26903933 | tier2 | In-frame | 3561 | NA | 0.36399 |
| SARC | TCGA-DX-A8BN-01A | TCGA-DX-A8BN | CEP89|CEACAM1 | CEP89 | CEACAM1 | 19 | 19 | -1 | -1 | 10 | 2 | 1 | 0.097 | 33406243 | 43016631 | tier2 | Out-of-frame | 3567 | NA | 0.37674 |
|
Showing page 248 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.