Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
| Showing page 247 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-DX-AB2F-01A | TCGA-DX-AB2F | C12orf28|CTD-2021H9.3 | C12orf28 | CTD-2021H9.3 | 12 | 12 | 1 | -1 | 10 | 2 | 1 | 0.75 | 70304710 | 71441459 | tier3 | In-frame | 2412 | NA | 0 |
| SARC | TCGA-DX-A3M1-01A | TCGA-DX-A3M1 | C12orf63|CPM | C12orf63 | CPM | 12 | 12 | 1 | -1 | 5 | 3 | 2 | 2.3 | 97114343 | 69265736 | tier1 | Out-of-frame | 2446 | validated | 0 |
| SARC | TCGA-DX-A3M1-01A | TCGA-DX-A3M1 | C12orf63|SLC5A8 | C12orf63 | SLC5A8 | 12 | 12 | 1 | -1 | 18 | 16 | 8 | 5.1 | 97102581 | 101588940 | tier1 | In-frame | 2448 | validated | 0 |
| SARC | TCGA-FX-A2QS-01A | TCGA-FX-A2QS | C12orf66|CPM | C12orf66 | CPM | 12 | 12 | -1 | -1 | 11 | 9 | 9 | 0.64 | 64609458 | 69326620 | tier1 | CDS-5UTR | 2451 | validated | 0 |
| SARC | TCGA-X6-A8C6-01A | TCGA-X6-A8C6 | C15orf24|CD27 | C15orf24 | CD27 | 15 | 12 | -1 | 1 | 13 | 13 | 13 | 100 | 34388096 | 6554590 | tier1 | Out-of-frame | 2467 | NA | 0 |
| SARC | TCGA-DX-AB2T-01A | TCGA-DX-AB2T | C18orf25|GABRR2 | C18orf25 | GABRR2 | 18 | 6 | 1 | -1 | 2 | 1 | 1 | 0.093 | 43754296 | 90009584 | tier3 | 5UTR-CDS | 2542 | NA | 0 |
| SARC | TCGA-DX-A1L3-01A | TCGA-DX-A1L3 | C1orf9|C12orf28 | C1orf9 | C12orf28 | 1 | 12 | 1 | 1 | 22 | 18 | 17 | 0.19 | 172502637 | 70249060 | tier1 | CDS-5UTR | 2609 | validated | 0 |
| SARC | TCGA-DX-A2J0-01A | TCGA-DX-A2J0 | C1orf9|C12orf42 | C1orf9 | C12orf42 | 1 | 12 | 1 | -1 | 12 | 4 | 2 | 1.1 | 172502637 | 103696337 | tier1 | Out-of-frame | 2610 | non-validated | 0 |
| SARC | TCGA-DX-A1L3-01A | TCGA-DX-A1L3 | C1orf9|CDH18 | C1orf9 | CDH18 | 1 | 5 | 1 | -1 | 56 | 21 | 19 | 2.6 | 172502637 | 19981287 | tier1 | CDS-5UTR | 2612 | validated | 0 |
| SARC | TCGA-DX-A1KY-01A | TCGA-DX-A1KY | C1orf9|CXorf21 | C1orf9 | CXorf21 | 1 | X | 1 | -1 | 249 | 89 | 83 | 1.4 | 172526934 | 30594983 | tier1 | CDS-5UTR | 2613 | NA | 0 |
| SARC | TCGA-X6-A8C6-01A | TCGA-X6-A8C6 | C1orf9|DENND1B | C1orf9 | DENND1B | 1 | 1 | 1 | -1 | 3 | 4 | 4 | 0.12 | 172547529 | 197742062 | tier1 | Out-of-frame | 2615 | NA | 0 |
| SARC | TCGA-DX-A1L3-01A | TCGA-DX-A1L3 | C1orf9|RP11-362K2.2 | C1orf9 | RP11-362K2.2 | 1 | 12 | 1 | 1 | 29 | 14 | 13 | 0.087 | 172502637 | 59206196 | tier1 | In-frame | 2620 | validated | 0 |
| SARC | TCGA-K1-A6RU-01A | TCGA-K1-A6RU | C21orf70|FER | C21orf70 | FER | 21 | 5 | 1 | 1 | 3 | 3 | 3 | 0.032 | 46380083 | 108436097 | tier1 | In-frame | 2663 | NA | 0 |
| SARC | TCGA-DX-A23Y-01A | TCGA-DX-A23Y | C3orf26|KRT1 | C3orf26 | KRT1 | 3 | 12 | 1 | -1 | 20 | 2 | 2 | 1.3 | 99536887 | 53072540 | tier1 | Out-of-frame | 2708 | NA | 0 |
| SARC | TCGA-HB-A3YV-01A | TCGA-HB-A3YV | C6orf168|C12orf28 | C6orf168 | C12orf28 | 6 | 12 | -1 | 1 | 3 | 1 | 1 | 2.7 | 99781227 | 70249060 | tier2 | CDS-5UTR | 2753 | NA | 0 |
| SARC | TCGA-HB-A3YV-01A | TCGA-HB-A3YV | C6orf186|REPS1 | C6orf186 | REPS1 | 6 | 6 | -1 | -1 | 5 | 6 | 6 | 0.18 | 110679158 | 139251235 | tier1 | Out-of-frame | 2757 | NA | 0 |
| SARC | TCGA-DX-A3LS-01A | TCGA-DX-A3LS | C6orf204|CSMD1 | C6orf204 | CSMD1 | 6 | 8 | -1 | -1 | 10 | 2 | 2 | 0.27 | 118953616 | 3072213 | tier1 | In-frame | 2762 | non-validated | 0 |
| SARC | TCGA-DX-AB3A-01A | TCGA-DX-AB3A | CACHD1|USP32 | CACHD1 | USP32 | 1 | 17 | 1 | -1 | 6 | 4 | 4 | 1.3 | 65107652 | 58422969 | tier1 | In-frame | 2851 | NA | 0.35687 |
| SARC | TCGA-DX-A23R-01A | TCGA-DX-A23R | CACNA1C|EEA1 | CACNA1C | EEA1 | 12 | 12 | 1 | -1 | 89 | 53 | 53 | 1.3 | 2229596 | 93220061 | tier1 | In-frame | 2856 | non-validated | 0.3771 |
| SARC | TCGA-DX-A23R-01A | TCGA-DX-A23R | CACNA1C|SLC6A15 | CACNA1C | SLC6A15 | 12 | 12 | 1 | -1 | 18 | 13 | 10 | 6.7 | 2229596 | 85264449 | tier1 | In-frame | 2858 | non-validated | 0.36299 |
|
Showing page 247 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.