Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-FX-A3NK-01A | TCGA-FX-A3NK | ATP8B4|LINGO1 | ATP8B4 | LINGO1 | 15 | 15 | -1 | -1 | 10 | 11 | 7 | 7.2 | 50330965 | 77908242 | tier1 | Out-of-frame | 1772 | NA | 0.37536 |
| SARC | TCGA-FX-A3NK-01A | TCGA-FX-A3NK | ATRN|C20orf194 | ATRN | C20orf194 | 20 | 20 | 1 | -1 | 6 | 5 | 5 | 0.61 | 3452164 | 3363153 | tier1 | In-frame | 1786 | NA | 0 |
| SARC | TCGA-K1-A42X-01A | TCGA-K1-A42X | ATRN|UQCRB | ATRN | UQCRB | 20 | 8 | 1 | -1 | 23 | 20 | 19 | 0.49 | 3541552 | 97245455 | tier1 | In-frame | 1789 | NA | 0.3561 |
| SARC | TCGA-DX-A3M1-01A | TCGA-DX-A3M1 | AUH|CPM | AUH | CPM | 9 | 12 | -1 | -1 | 3 | 5 | 3 | 0.37 | 94058303 | 69265736 | tier1 | Out-of-frame | 1821 | validated | 0.34593 |
| SARC | TCGA-DX-A1L1-01A | TCGA-DX-A1L1 | AUTS2|SEMA3A | AUTS2 | SEMA3A | 7 | 7 | 1 | -1 | 8 | 1 | 1 | 1.2 | 70163606 | 83689874 | tier2 | Out-of-frame | 1826 | NA | 0.36075 |
| SARC | TCGA-DX-A6YQ-01A | TCGA-DX-A6YQ | AXL|SQSTM1 | AXL | SQSTM1 | 19 | 5 | 1 | 1 | 2 | 38 | 2 | 0.041 | 41767670 | 179250858 | tier3 | 3UTR-CDS | 1838 | NA | 0.39 |
| SARC | TCGA-DX-A23R-01A | TCGA-DX-A23R | BACE2|TACR1 | BACE2 | TACR1 | 21 | 2 | 1 | -1 | 2 | 2 | 1 | 0.07 | 42629253 | 75278574 | tier3 | Out-of-frame | 1890 | non-validated | 0.36931 |
| SARC | TCGA-WP-A9GB-01A | TCGA-WP-A9GB | BBS2|C15orf41 | BBS2 | C15orf41 | 16 | 15 | -1 | 1 | 5 | 4 | 4 | 0.074 | 56553658 | 36946299 | tier1 | CDS-5UTR | 1951 | validated | 0 |
| SARC | TCGA-FX-A2QS-01A | TCGA-FX-A2QS | BBX|VSTM1 | BBX | VSTM1 | 3 | 19 | 1 | -1 | 3 | 2 | 2 | 0.32 | 107245245 | 54545623 | tier1 | 5UTR-CDS | 1961 | non-validated | 0.34227 |
| SARC | TCGA-DX-AB2Q-01A | TCGA-DX-AB2Q | BCAS3|SYTL2 | BCAS3 | SYTL2 | 17 | 11 | 1 | -1 | 5 | 4 | 4 | 0.81 | 59161925 | 85425550 | tier1 | In-frame | 1995 | NA | 0.36142 |
| SARC | TCGA-FX-A2QS-01A | TCGA-FX-A2QS | BCL9|BEST3 | BCL9 | BEST3 | 1 | 12 | 1 | -1 | 15 | 11 | 8 | 0.065 | 147013444 | 70049593 | tier1 | 5UTR-CDS | 2043 | non-validated | 0.35008 |
| SARC | TCGA-DX-A23Y-01A | TCGA-DX-A23Y | BEST3|C12orf28 | BEST3 | C12orf28 | 12 | 12 | -1 | 1 | 2 | 5 | 5 | 0.39 | 70092985 | 70297424 | tier2 | 5UTR-CDS | 2071 | NA | 0 |
| SARC | TCGA-PC-A5DN-01A | TCGA-PC-A5DN | BEST3|C12orf28 | BEST3 | C12orf28 | 12 | 12 | -1 | 1 | 27 | 18 | 16 | 0.39 | 70065208 | 70249060 | tier1 | CDS-5UTR | 2072 | NA | 0 |
| SARC | TCGA-3B-A9HS-01A | TCGA-3B-A9HS | BEST3|PTPRR | BEST3 | PTPRR | 12 | 12 | -1 | -1 | 2 | 3 | 2 | 0.01 | 70065208 | 71158558 | tier2 | Out-of-frame | 2073 | NA | 0.37292 |
| SARC | TCGA-QQ-A5VA-01A | TCGA-QQ-A5VA | BLMH|ABCA9 | BLMH | ABCA9 | 17 | 17 | -1 | -1 | 3 | 4 | 3 | 0.55 | 28612406 | 66992155 | tier1 | In-frame | 2120 | NA | 0.35827 |
| SARC | TCGA-DX-A2J0-01A | TCGA-DX-A2J0 | BROX|SUSD4 | BROX | SUSD4 | 1 | 1 | 1 | -1 | 7 | 2 | 1 | 1.8 | 222886284 | 223532463 | tier4 | 5UTR-CDS | 2224 | validated | 0.32903 |
| SARC | TCGA-DX-A3U5-01A | TCGA-DX-A3U5 | BTBD11|CMKLR1 | BTBD11 | CMKLR1 | 12 | 12 | 1 | -1 | 19 | 19 | 19 | 0.31 | 107975081 | 108687441 | tier1 | CDS-5UTR | 2259 | validated | 0.3525 |
| SARC | TCGA-DX-A48N-01A | TCGA-DX-A48N | C12orf26|ATP2B1 | C12orf26 | ATP2B1 | 12 | 12 | 1 | -1 | 346 | 199 | 179 | 0.52 | 82793173 | 90005149 | tier1 | In-frame | 2406 | NA | 0 |
| SARC | TCGA-DX-A6BG-01A | TCGA-DX-A6BG | C12orf26|CPM | C12orf26 | CPM | 12 | 12 | 1 | -1 | 11 | 14 | 13 | 0.5 | 82850599 | 69326620 | tier1 | CDS-5UTR | 2407 | NA | 0 |
| SARC | TCGA-DX-AB35-01A | TCGA-DX-AB35 | C12orf26|PTPRQ | C12orf26 | PTPRQ | 12 | 12 | 1 | 1 | 3 | 3 | 3 | 0.044 | 82796909 | 81025971 | tier1 | In-frame | 2410 | NA | 0 |
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