Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-DX-A3LS-01A | TCGA-DX-A3LS | ARHGAP10|EDNRA | ARHGAP10 | EDNRA | 4 | 4 | 1 | 1 | 4 | 5 | 5 | 0.14 | 148887990 | 148441003 | tier1 | In-frame | 1206 | non-validated | 0.37972 |
| SARC | TCGA-DX-A3LY-01B | TCGA-DX-A3LY | ARHGDIA|ACVRL1 | ARHGDIA | ACVRL1 | 17 | 12 | -1 | 1 | 2 | 11 | 4 | 0.026 | 79825598 | 52306155 | tier2 | 3UTR-5UTR | 1268 | non-validated | 0.3849 |
| SARC | TCGA-DX-A1L2-01A | TCGA-DX-A1L2 | ARHGEF11|CD48 | ARHGEF11 | CD48 | 1 | 1 | -1 | -1 | 49 | 32 | 26 | 0.44 | 157014091 | 160654979 | tier1 | Out-of-frame | 1289 | non-validated | 0.37721 |
| SARC | TCGA-DX-A6BE-01A | TCGA-DX-A6BE | ARID2|PTPRB | ARID2 | PTPRB | 12 | 12 | 1 | -1 | 10 | 11 | 8 | 0.29 | 46125097 | 70933802 | tier1 | In-frame | 1364 | NA | 0.37901 |
| SARC | TCGA-HS-A5N8-01A | TCGA-HS-A5N8 | ARL15|ITGA1 | ARL15 | ITGA1 | 5 | 5 | -1 | 1 | 6 | 1 | 1 | 0.005 | 53409032 | 52243175 | tier4 | In-frame | 1396 | NA | 0.37628 |
| SARC | TCGA-DX-A7EU-01A | TCGA-DX-A7EU | ARRB1|LY9 | ARRB1 | LY9 | 11 | 1 | -1 | 1 | 13 | 11 | 9 | 0.29 | 75062632 | 160783426 | tier1 | Out-of-frame | 1454 | NA | 0.37585 |
| SARC | TCGA-DX-A1KY-01A | TCGA-DX-A1KY | ASH1L|SELL | ASH1L | SELL | 1 | 1 | -1 | -1 | 44 | 51 | 49 | 1 | 155531944 | 169665694 | tier1 | 5UTR-CDS | 1527 | NA | 0.38021 |
| SARC | TCGA-VT-A80J-01A | TCGA-VT-A80J | ATF6|ODZ3 | ATF6 | ODZ3 | 1 | 4 | 1 | 1 | 8 | 22 | 18 | 2.9 | 161762117 | 183522077 | tier2 | In-frame | 1600 | NA | 0.3711 |
| SARC | TCGA-KF-A41W-01A | TCGA-KF-A41W | ATP11A|ADPRHL1 | ATP11A | ADPRHL1 | 13 | 13 | 1 | -1 | 14 | 7 | 6 | 0.59 | 113439571 | 114088182 | tier1 | Out-of-frame | 1663 | NA | 0.34572 |
| SARC | TCGA-DX-A1KU-01A | TCGA-DX-A1KU | ATP1B1|IL26 | ATP1B1 | IL26 | 1 | 12 | 1 | -1 | 4 | 2 | 2 | 1.2 | 169080736 | 68619063 | tier1 | Out-of-frame | 1696 | non-validated | 0.35525 |
| SARC | TCGA-DX-A8BM-01A | TCGA-DX-A8BM | ATP1B2|SLC37A3 | ATP1B2 | SLC37A3 | 17 | 7 | 1 | -1 | 7 | 5 | 5 | 4.8 | 7554948 | 140037149 | tier1 | Out-of-frame | 1701 | NA | 0.34724 |
| SARC | TCGA-3B-A9HO-01A | TCGA-3B-A9HO | ATP2B1|C8orf34 | ATP2B1 | C8orf34 | 12 | 8 | -1 | 1 | 16 | 24 | 24 | 0.26 | 90102996 | 69621229 | tier1 | NA | 1712 | NA | 0 |
| SARC | TCGA-3B-A9HO-01A | TCGA-3B-A9HO | ATP2B1|CORO1C | ATP2B1 | CORO1C | 12 | 12 | -1 | -1 | 7 | 2 | 2 | 0.007 | 90102996 | 109095099 | tier1 | NA | 1714 | NA | 0.37089 |
| SARC | TCGA-DX-A3U5-01A | TCGA-DX-A3U5 | ATP2B1|DCDC2 | ATP2B1 | DCDC2 | 12 | 6 | -1 | -1 | 19 | 6 | 6 | 1.2 | 90102996 | 24302272 | tier1 | NA | 1715 | non-validated | 0.36863 |
| SARC | TCGA-DX-A3LS-01A | TCGA-DX-A3LS | ATP2B1|EXOC4 | ATP2B1 | EXOC4 | 12 | 7 | -1 | 1 | 3 | 4 | 4 | 0.3 | 90049456 | 133749044 | tier1 | Out-of-frame | 1716 | validated | 0.3704 |
| SARC | TCGA-DX-AB2G-01A | TCGA-DX-AB2G | ATP2B1|GRIP1 | ATP2B1 | GRIP1 | 12 | 12 | -1 | -1 | 5 | 1 | 1 | 1.3 | 89996820 | 66935730 | tier2 | Out-of-frame | 1717 | NA | 0.37385 |
| SARC | TCGA-3B-A9HO-01A | TCGA-3B-A9HO | ATP2B1|LIN7A | ATP2B1 | LIN7A | 12 | 12 | -1 | -1 | 2 | 5 | 5 | 0.44 | 90003714 | 81283148 | tier2 | Out-of-frame | 1720 | NA | 0.37594 |
| SARC | TCGA-3B-A9HO-01A | TCGA-3B-A9HO | ATP2B1|RBM19 | ATP2B1 | RBM19 | 12 | 12 | -1 | -1 | 31 | 25 | 25 | 0.007 | 90102996 | 114282593 | tier1 | NA | 1721 | NA | 0.36864 |
| SARC | TCGA-DX-AB32-01A | TCGA-DX-AB32 | ATP2B4|OPTC | ATP2B4 | OPTC | 1 | 1 | 1 | 1 | 5 | 5 | 5 | 0.01 | 203683405 | 203472042 | tier1 | In-frame | 1725 | NA | 0.37526 |
| SARC | TCGA-DX-AB2F-01A | TCGA-DX-AB2F | ATP7A|PTPRR | ATP7A | PTPRR | X | 12 | 1 | -1 | 6 | 8 | 8 | 1.1 | 77166332 | 71033057 | tier1 | 5UTR-CDS | 1764 | NA | 0.37654 |
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