Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| SARC | TCGA-DX-A240-01A | TCGA-DX-A240 | ADIPOR2|SLC2A13 | ADIPOR2 | SLC2A13 | 12 | 12 | 1 | -1 | 48 | 22 | 20 | 0.29 | 1863680 | 40442012 | tier1 | Out-of-frame | 511 | validated | 0.34383 |
| SARC | TCGA-K1-A6RV-01A | TCGA-K1-A6RV | AEBP1|SLC38A5 | AEBP1 | SLC38A5 | 7 | X | 1 | -1 | 2 | 13 | 13 | 0.009 | 44154161 | 48327824 | tier3 | 3UTR-5UTR | 558 | NA | 0.36139 |
| SARC | TCGA-DX-AB2H-01A | TCGA-DX-AB2H | AGAP1|TRHDE | AGAP1 | TRHDE | 2 | 12 | 1 | 1 | 3 | 4 | 4 | 0.35 | 236403493 | 72936071 | tier1 | Out-of-frame | 621 | NA | 0.36882 |
| SARC | TCGA-JV-A75J-01A | TCGA-JV-A75J | AKNA|ENOX1 | AKNA | ENOX1 | 9 | 13 | -1 | -1 | 2 | 13 | 11 | 0.005 | 117150140 | 44241680 | tier2 | 5UTR-5UTR | 754 | NA | 0.36605 |
| SARC | TCGA-DX-AB2V-01A | TCGA-DX-AB2V | ALPL|EIF4G3 | ALPL | EIF4G3 | 1 | 1 | 1 | -1 | 2 | 1 | 1 | 0.16 | 21889777 | 21154191 | tier2 | Out-of-frame | 849 | NA | 0.36282 |
| SARC | TCGA-DX-AB2E-01A | TCGA-DX-AB2E | ANGPT1|TNFRSF11B | ANGPT1 | TNFRSF11B | 8 | 8 | -1 | -1 | 88 | 50 | 45 | 0.37 | 108509490 | 119945539 | tier2 | In-frame | 894 | NA | 0.37292 |
| SARC | TCGA-DX-A1L0-01A | TCGA-DX-A1L0 | ANKH|DNAH5 | ANKH | DNAH5 | 5 | 5 | -1 | -1 | 11 | 20 | 19 | 1.3 | 14871461 | 13736041 | tier1 | Out-of-frame | 916 | non-validated | 0.34402 |
| SARC | TCGA-FX-A2QS-01A | TCGA-FX-A2QS | ANKH|R3HDM1 | ANKH | R3HDM1 | 5 | 2 | -1 | 1 | 2 | 1 | 1 | 0.39 | 14871461 | 136360070 | tier2 | CDS-5UTR | 918 | validated | 0.3431 |
| SARC | TCGA-DX-A1KZ-01A | TCGA-DX-A1KZ | ANKH|STEAP3 | ANKH | STEAP3 | 5 | 2 | -1 | 1 | 29 | 25 | 23 | 1.3 | 14871461 | 120003065 | tier1 | Out-of-frame | 919 | NA | 0.36063 |
| SARC | TCGA-IW-A3M5-01A | TCGA-IW-A3M5 | ANKRD11|NAALADL2 | ANKRD11 | NAALADL2 | 16 | 3 | -1 | 1 | 3 | 1 | 1 | 0.47 | 89357033 | 174951721 | tier2 | Out-of-frame | 954 | validated | 0.37358 |
| SARC | TCGA-MB-A5Y8-01A | TCGA-MB-A5Y8 | ANKRD13C|PTGER3 | ANKRD13C | PTGER3 | 1 | 1 | -1 | -1 | 6 | 3 | 3 | 0.28 | 70766447 | 71440071 | tier1 | In-frame | 966 | NA | 0.35672 |
| SARC | TCGA-DX-A1KZ-01A | TCGA-DX-A1KZ | ANKRD33B|ANKH | ANKRD33B | ANKH | 5 | 5 | 1 | -1 | 9 | 6 | 6 | 0.14 | 10564945 | 14769300 | tier1 | In-frame | 985 | NA | 0.34907 |
| SARC | TCGA-PC-A5DN-01A | TCGA-PC-A5DN | ANO2|NUDT3 | ANO2 | NUDT3 | 12 | 6 | -1 | -1 | 24 | 22 | 20 | 0.051 | 5915218 | 34263462 | tier1 | In-frame | 1028 | NA | 0.35921 |
| SARC | TCGA-FX-A2QS-01A | TCGA-FX-A2QS | ANO4|C12orf66 | ANO4 | C12orf66 | 12 | 12 | 1 | -1 | 7 | 11 | 11 | 0.11 | 101111325 | 64609743 | tier1 | In-frame | 1029 | non-validated | 0 |
| SARC | TCGA-DX-A1L4-01A | TCGA-DX-A1L4 | ANO4|NTS | ANO4 | NTS | 12 | 12 | 1 | 1 | 39 | 17 | 17 | 0.17 | 101381448 | 86272123 | tier2 | Out-of-frame | 1030 | NA | 0.35019 |
| SARC | TCGA-DX-A3LT-01A | TCGA-DX-A3LT | ANO5|CARS | ANO5 | CARS | 11 | 11 | 1 | -1 | 2 | 1 | 1 | 0.66 | 22215078 | 3063486 | tier2 | In-frame | 1031 | validated | 0.35543 |
| SARC | TCGA-DX-AB36-01A | TCGA-DX-AB36 | ANO5|CPM | ANO5 | CPM | 11 | 12 | 1 | -1 | 22 | 18 | 16 | 0.45 | 22297745 | 69252851 | tier1 | Out-of-frame | 1032 | NA | 0.34747 |
| SARC | TCGA-QQ-A5VA-01A | TCGA-QQ-A5VA | ANO6|EDA | ANO6 | EDA | 12 | X | 1 | 1 | 20 | 6 | 6 | 1.1 | 45797319 | 69080688 | tier1 | Out-of-frame | 1033 | NA | 0.35857 |
| SARC | TCGA-K1-A6RU-01A | TCGA-K1-A6RU | APBA1|SUSD1 | APBA1 | SUSD1 | 9 | 9 | -1 | -1 | 11 | 6 | 6 | 0.42 | 72071163 | 114804240 | tier1 | Out-of-frame | 1100 | NA | 0.3602 |
| SARC | TCGA-3R-A8YX-01A | TCGA-3R-A8YX | ARFGEF1|LGR5 | ARFGEF1 | LGR5 | 8 | 12 | -1 | 1 | 4 | 4 | 4 | 1.2 | 68163534 | 71898394 | tier1 | Out-of-frame | 1194 | NA | 0.36436 |
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