Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| READ | TCGA-DC-4745-01A | TCGA-DC-4745 | SPATA13|TNFRSF19 | SPATA13 | TNFRSF19 | 13 | 13 | 1 | 1 | 101 | 95 | 81 | 4.4 | 24735071 | 24164289 | tier1 | 5UTR-5UTR | 16670 | NA | 0 |
| READ | TCGA-DC-4745-01A | TCGA-DC-4745 | SSPN|PKP2 | SSPN | PKP2 | 12 | 12 | 1 | -1 | 4 | 2 | 2 | 0.43 | 26275085 | 32949232 | tier1 | NA | 16916 | NA | 0 |
| READ | TCGA-AF-5654-01A | TCGA-AF-5654 | STK24|SLC15A1 | STK24 | SLC15A1 | 13 | 13 | -1 | -1 | 2 | 7 | 6 | 0.35 | 99228999 | 99379113 | tier2 | Out-of-frame | 17068 | NA | 0 |
| READ | TCGA-EI-6510-01A | TCGA-EI-6510 | TMEM111|RHOA | TMEM111 | RHOA | 3 | 3 | -1 | -1 | 269 | 235 | 226 | 2.4 | 10012266 | 49400059 | tier1 | In-frame | 17932 | NA | 0 |
| READ | TCGA-AF-5654-01A | TCGA-AF-5654 | TMEM184B|CSNK1E | TMEM184B | CSNK1E | 22 | 22 | -1 | -1 | 2 | 4 | 4 | 0.029 | 38620792 | 38699253 | tier2 | In-frame | 17999 | NA | 0 |
| READ | TCGA-AG-3732-01A | TCGA-AG-3732 | TP53I13|CEP112 | TP53I13 | CEP112 | 17 | 17 | 1 | -1 | 5 | 8 | 7 | 2.2 | 27899075 | 64173138 | tier1 | Out-of-frame | 18475 | NA | 0 |
| READ | TCGA-DY-A1DD-01A | TCGA-DY-A1DD | TPT1|MME | TPT1 | MME | 13 | 3 | -1 | 1 | 2 | 16 | 1 | 0.22 | 45911008 | 154801733 | tier3 | NA | 18508 | NA | 0 |
| READ | TCGA-CL-5917-01A | TCGA-CL-5917 | TUBGCP5|KCNU1 | TUBGCP5 | KCNU1 | 15 | 8 | 1 | 1 | 7 | 2 | 1 | 0.042 | 22872499 | 36763226 | tier2 | Out-of-frame | 18949 | NA | 0 |
| READ | TCGA-CI-6621-01A | TCGA-CI-6621 | VKORC1L1|ACHE | VKORC1L1 | ACHE | 7 | 7 | 1 | -1 | 12 | 25 | 24 | 0.62 | 65338552 | 100488959 | tier1 | In-frame | 19584 | NA | 0 |
| SARC | TCGA-DX-A3M1-01A | TCGA-DX-A3M1 | ABCA9|CEP112 | ABCA9 | CEP112 | 17 | 17 | -1 | -1 | 2 | 10 | 10 | 0.23 | 67020355 | 63685336 | tier2 | Out-of-frame | 47 | validated | 0.33823 |
| SARC | TCGA-FX-A2QS-01A | TCGA-FX-A2QS | ABCA9|TANC2 | ABCA9 | TANC2 | 17 | 17 | -1 | 1 | 15 | 11 | 11 | 0.78 | 66978703 | 61345109 | tier1 | In-frame | 48 | non-validated | 0.35065 |
| SARC | TCGA-DX-A6Z0-01A | TCGA-DX-A6Z0 | ABL1|PTPRN2 | ABL1 | PTPRN2 | 9 | 7 | 1 | -1 | 2 | 2 | 1 | 0.28 | 133589842 | 157475629 | tier2 | Out-of-frame | 114 | NA | 0.39131 |
| SARC | TCGA-3B-A9HS-01A | TCGA-3B-A9HS | ACSS3|INSR | ACSS3 | INSR | 12 | 19 | 1 | -1 | 2 | 11 | 11 | 0.037 | 81545875 | 7143101 | tier2 | Out-of-frame | 328 | NA | 0.38842 |
| SARC | TCGA-IW-A3M6-01A | TCGA-IW-A3M6 | ACTG2|ALK | ACTG2 | ALK | 2 | 2 | 1 | -1 | 1072 | 594 | 556 | 0.46 | 74128564 | 29449940 | tier1 | Out-of-frame | 368 | NA | 0.3835 |
| SARC | TCGA-DX-A6BF-01A | TCGA-DX-A6BF | ACVR2A|AC010859.1 | ACVR2A | AC010859.1 | 2 | 8 | 1 | 1 | 33 | 24 | 22 | 0.11 | 148602776 | 97847201 | tier1 | In-frame | 396 | NA | 0.37636 |
| SARC | TCGA-FX-A2QS-01A | TCGA-FX-A2QS | ACVR2A|SUMO1 | ACVR2A | SUMO1 | 2 | 2 | 1 | -1 | 2 | 34 | 31 | 0.089 | 148680680 | 203072044 | tier2 | Out-of-frame | 400 | validated | 0.38265 |
| SARC | TCGA-LI-A9QH-01A | TCGA-LI-A9QH | ADAMTS17|SLC12A1 | ADAMTS17 | SLC12A1 | 15 | 15 | -1 | 1 | 5 | 5 | 5 | 1 | 100871094 | 48548008 | tier1 | In-frame | 440 | NA | 0.36052 |
| SARC | TCGA-DX-A7EI-01A | TCGA-DX-A7EI | ADAMTS20|C12orf28 | ADAMTS20 | C12orf28 | 12 | 12 | -1 | 1 | 2 | 1 | 1 | 0.016 | 43925839 | 70329893 | tier2 | Out-of-frame | 441 | NA | 0 |
| SARC | TCGA-DX-A23R-01A | TCGA-DX-A23R | ADAMTS7|AC087465.1 | ADAMTS7 | AC087465.1 | 15 | 15 | -1 | -1 | 16 | 20 | 19 | 0.65 | 79080573 | 77407661 | tier1 | Out-of-frame | 442 | validated | 0.34241 |
| SARC | TCGA-HB-A3L4-01A | TCGA-HB-A3L4 | ADCY9|SPG20 | ADCY9 | SPG20 | 16 | 13 | -1 | -1 | 12 | 5 | 4 | 0.003 | 4033233 | 36903654 | tier1 | Out-of-frame | 484 | NA | 0.36254 |
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