Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| READ | TCGA-DC-6160-01A | TCGA-DC-6160 | KCNQ1|MMP26 | KCNQ1 | MMP26 | 11 | 11 | 1 | 1 | 3 | 2 | 1 | 0.13 | 2610084 | 4788500 | tier2 | CDS-5UTR | 8601 | NA | 0.36288 |
| READ | TCGA-AG-3902-01A | TCGA-AG-3902 | KIAA1432|KANK1 | KIAA1432 | KANK1 | 9 | 9 | 1 | 1 | 7 | 4 | 2 | 1.7 | 5629453 | 676890 | tier1 | CDS-5UTR | 8876 | NA | 0.34877 |
| READ | TCGA-EI-7002-01A | TCGA-EI-7002 | LHFPL2|PTPRK | LHFPL2 | PTPRK | 5 | 6 | -1 | -1 | 45 | 15 | 11 | 1.1 | 77805607 | 128411137 | tier1 | In-frame | 9323 | NA | 0.37193 |
| READ | TCGA-AF-2690-01A | TCGA-AF-2690 | MPP5|CEP128 | MPP5 | CEP128 | 14 | 14 | 1 | -1 | 12 | 8 | 7 | 0.076 | 67736500 | 81046767 | tier1 | 5UTR-CDS | 10608 | NA | 0.36007 |
| READ | TCGA-F5-6814-01A | TCGA-F5-6814 | MPP5|GPHN | MPP5 | GPHN | 14 | 14 | 1 | 1 | 4 | 7 | 7 | 0.24 | 67708250 | 67346657 | tier4 | 5UTR-CDS | 10615 | non-validated | 0.36903 |
| READ | TCGA-AG-3731-01A | TCGA-AG-3731 | MRPL37|GPR172B | MRPL37 | GPR172B | 1 | 17 | 1 | -1 | 34 | 28 | 26 | 0.16 | 54671083 | 4936464 | tier1 | Out-of-frame | 10657 | NA | 0.33699 |
| READ | TCGA-F5-6810-01A | TCGA-F5-6810 | NOTCH3|SPECC1 | NOTCH3 | SPECC1 | 19 | 17 | -1 | 1 | 10 | 8 | 8 | 0.19 | 15297689 | 20107646 | tier1 | In-frame | 11674 | NA | 0.37214 |
| READ | TCGA-CI-6624-01C | TCGA-CI-6624 | OBFC1|TM9SF3 | OBFC1 | TM9SF3 | 10 | 10 | -1 | -1 | 2 | 4 | 3 | 1.1 | 105677220 | 98336586 | tier3 | Out-of-frame | 11989 | NA | 0.34865 |
| READ | TCGA-G5-6641-01A | TCGA-G5-6641 | PLCB4|RASA3 | PLCB4 | RASA3 | 20 | 13 | 1 | -1 | 4 | 5 | 4 | 3 | 9424890 | 114762215 | tier1 | In-frame | 12965 | NA | 0.3813 |
| READ | TCGA-DY-A1DF-01A | TCGA-DY-A1DF | PRR12|SYMPK | PRR12 | SYMPK | 19 | 19 | 1 | -1 | 16 | 11 | 10 | 0.085 | 50119476 | 46357765 | tier1 | CDS-5UTR | 13618 | NA | 0.36506 |
| READ | TCGA-AF-2693-01A | TCGA-AF-2693 | PTPRF|DHRS4L2 | PTPRF | DHRS4L2 | 1 | 14 | 1 | 1 | 8 | 18 | 16 | 0.009 | 44064584 | 24464241 | tier1 | In-frame | 13854 | NA | 0.38063 |
| READ | TCGA-EI-7002-01A | TCGA-EI-7002 | PTPRK|IL20RA | PTPRK | IL20RA | 6 | 6 | -1 | -1 | 61 | 44 | 40 | 9.4 | 128841404 | 137338240 | tier1 | In-frame | 13881 | NA | 0 |
| READ | TCGA-AF-6136-01A | TCGA-AF-6136 | PTPRK|RSPO3 | PTPRK | RSPO3 | 6 | 6 | -1 | 1 | 48 | 20 | 16 | 0.049 | 128841404 | 127469793 | tier1 | In-frame | 13886 | NA | 0 |
| READ | TCGA-DT-5265-01A | TCGA-DT-5265 | PTPRK|RSPO3 | PTPRK | RSPO3 | 6 | 6 | -1 | 1 | 17 | 16 | 12 | 0.049 | 128841404 | 127469793 | tier1 | In-frame | 13890 | NA | 0 |
| READ | TCGA-G5-6233-01A | TCGA-G5-6233 | PTPRK|RSPO3 | PTPRK | RSPO3 | 6 | 6 | -1 | 1 | 57 | 41 | 36 | 0.049 | 128505577 | 127469793 | tier1 | In-frame | 13891 | NA | 0 |
| READ | TCGA-EI-6510-01A | TCGA-EI-6510 | RHOA|TMEM111 | RHOA | TMEM111 | 3 | 3 | -1 | -1 | 400 | 387 | 355 | 2.4 | 49405861 | 10011485 | tier1 | In-frame | 14651 | NA | 0 |
| READ | TCGA-AF-5654-01A | TCGA-AF-5654 | RNF43|HSF5 | RNF43 | HSF5 | 17 | 17 | -1 | -1 | 16 | 8 | 6 | 0.77 | 56492687 | 56499791 | tier1 | Out-of-frame | 14847 | NA | 0 |
| READ | TCGA-AG-3731-01A | TCGA-AG-3731 | SAE1|GRIN2D | SAE1 | GRIN2D | 19 | 19 | 1 | 1 | 24 | 14 | 14 | 0.46 | 47634285 | 48945026 | tier1 | In-frame | 15265 | NA | 0 |
| READ | TCGA-AG-3731-01A | TCGA-AG-3731 | SAP30BP|KIAA0195 | SAP30BP | KIAA0195 | 17 | 17 | 1 | 1 | 4 | 5 | 5 | 0.012 | 73664705 | 73467881 | tier1 | CDS-5UTR | 15306 | NA | 0 |
| READ | TCGA-F5-6864-01A | TCGA-F5-6864 | SMEK2|ALK | SMEK2 | ALK | 2 | 2 | -1 | -1 | 4 | 7 | 6 | 4.1 | 55804451 | 29940563 | tier1 | In-frame | 16409 | NA | 0 |
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