Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-J4-AATZ-01A | TCGA-J4-AATZ | ZBTB20|LSAMP | ZBTB20 | LSAMP | 3 | 3 | -1 | -1 | 67 | 59 | 57 | 0.81 | 114693213 | 115738487 | tier1 | 5UTR-CDS | 20093 | NA | 0 |
| PRAD | TCGA-TP-A8TV-01A | TCGA-TP-A8TV | ZBTB20|TIGIT | ZBTB20 | TIGIT | 3 | 3 | -1 | 1 | 17 | 8 | 8 | 1.7 | 114219199 | 114012847 | tier1 | 5UTR-5UTR | 20099 | NA | 0 |
| PRAD | TCGA-G9-6348-01A | TCGA-G9-6348 | ZC3H15|SERINC1 | ZC3H15 | SERINC1 | 2 | 6 | 1 | -1 | 3 | 5 | 5 | 0.9 | 187351184 | 122779826 | tier1 | In-frame | 20133 | NA | 0 |
| PRAD | TCGA-ZG-A9LZ-01A | TCGA-ZG-A9LZ | ZMYND8|RNF43 | ZMYND8 | RNF43 | 20 | 17 | -1 | -1 | 7 | 7 | 7 | 0.007 | 45976600 | 56448394 | tier1 | Out-of-frame | 20349 | NA | 0 |
| PRAD | TCGA-VN-A88P-01A | TCGA-VN-A88P | ZNF148|MYLK | ZNF148 | MYLK | 3 | 3 | -1 | -1 | 2 | 4 | 4 | 0.023 | 125042153 | 123512691 | tier2 | 5UTR-5UTR | 20375 | NA | 0 |
| PRAD | TCGA-HC-7081-01A | TCGA-HC-7081 | ZNF292|PTPRO | ZNF292 | PTPRO | 6 | 12 | 1 | 1 | 6 | 5 | 4 | 0.58 | 87865477 | 15652376 | tier1 | Out-of-frame | 20447 | NA | 0 |
| PRAD | TCGA-KK-A5A1-01A | TCGA-KK-A5A1 | ZNF433|CACNA1A | ZNF433 | CACNA1A | 19 | 19 | -1 | -1 | 2 | 2 | 2 | 2.5 | 12140955 | 13341023 | tier3 | NA | 20505 | NA | 0 |
| PRAD | TCGA-HC-7819-01A | TCGA-HC-7819 | ZNF844|SLC4A4 | ZNF844 | SLC4A4 | 19 | 4 | 1 | 1 | 3 | 2 | 2 | 1.8 | 12175691 | 72316905 | tier1 | Out-of-frame | 20687 | NA | 0 |
| PRAD | TCGA-V1-A9ZK-01A | TCGA-V1-A9ZK | ZNRF2|BBS9 | ZNRF2 | BBS9 | 7 | 7 | 1 | 1 | 12 | 14 | 14 | 1.7 | 30395449 | 33303902 | tier1 | In-frame | 20698 | NA | 0 |
| READ | TCGA-EI-6509-01A | TCGA-EI-6509 | ARHGAP23|CCR7 | ARHGAP23 | CCR7 | 17 | 17 | 1 | -1 | 7 | 4 | 4 | 0.14 | 36584792 | 38715194 | tier1 | Out-of-frame | 1233 | NA | 0.36631 |
| READ | TCGA-F5-6864-01A | TCGA-F5-6864 | CAMK2D|TLL2 | CAMK2D | TLL2 | 4 | 10 | -1 | -1 | 12 | 8 | 8 | 1.4 | 114421619 | 98192719 | tier1 | In-frame | 2924 | NA | 0.3826 |
| READ | TCGA-AG-3731-01A | TCGA-AG-3731 | CAMTA2|LCK | CAMTA2 | LCK | 17 | 1 | -1 | 1 | 8 | 17 | 15 | 0.37 | 4890888 | 32745272 | tier1 | 5UTR-CDS | 2946 | NA | 0.38402 |
| READ | TCGA-AG-3725-01A | TCGA-AG-3725 | CD81|NDUFV1 | CD81 | NDUFV1 | 11 | 11 | 1 | 1 | 2 | 17 | 15 | 1 | 2418627 | 67375697 | tier3 | NA | 3303 | NA | 0.36454 |
| READ | TCGA-AH-6549-01A | TCGA-AH-6549 | CEACAM6|CCT5 | CEACAM6 | CCT5 | 19 | 5 | 1 | 1 | 2 | 80 | 70 | 1.2 | 42276113 | 10250033 | tier3 | 3UTR-5UTR | 3486 | NA | 0.37485 |
| READ | TCGA-F5-6864-01A | TCGA-F5-6864 | ERC1|GPC5 | ERC1 | GPC5 | 12 | 13 | 1 | 1 | 2 | 2 | 2 | 3.4 | 1250953 | 93518535 | tier2 | Out-of-frame | 5745 | NA | 0.3642 |
| READ | TCGA-AG-3725-01A | TCGA-AG-3725 | FAM129B|ERBB3 | FAM129B | ERBB3 | 9 | 12 | -1 | 1 | 2 | 4 | 4 | 0.02 | 130267619 | 56492035 | tier4 | 3UTR-5UTR | 6037 | NA | 0.38404 |
| READ | TCGA-CI-6622-01A | TCGA-CI-6622 | FAM193B|SGCD | FAM193B | SGCD | 5 | 5 | -1 | 1 | 2 | 3 | 3 | 1.5 | 176958283 | 155935611 | tier4 | In-frame | 6142 | NA | 0.34365 |
| READ | TCGA-AF-A56L-01A | TCGA-AF-A56L | FBXL20|GRB7 | FBXL20 | GRB7 | 17 | 17 | -1 | 1 | 151 | 168 | 158 | 0.82 | 37557614 | 37898505 | tier1 | CDS-5UTR | 6307 | NA | 0.38021 |
| READ | TCGA-AF-6655-01A | TCGA-AF-6655 | FGD4|CNTN5 | FGD4 | CNTN5 | 12 | 11 | 1 | 1 | 2 | 4 | 3 | 0.043 | 32655272 | 99426876 | tier2 | 5UTR-5UTR | 6433 | NA | 0.37074 |
| READ | TCGA-DC-6683-01A | TCGA-DC-6683 | INADL|MAP2K5 | INADL | MAP2K5 | 1 | 15 | 1 | 1 | 27 | 42 | 39 | 2.5 | 62274202 | 68040569 | tier1 | In-frame | 8224 | NA | 0.39372 |
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