Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-EJ-7781-01A | TCGA-EJ-7781 | UBE2D3|CA10 | UBE2D3 | CA10 | 4 | 17 | -1 | -1 | 87 | 165 | 148 | 0.48 | 103747642 | 49726615 | tier1 | In-frame | 19059 | NA | 0 |
| PRAD | TCGA-V1-A8WS-01A | TCGA-V1-A8WS | UBE2D3|GSTCD | UBE2D3 | GSTCD | 4 | 4 | -1 | 1 | 20 | 43 | 40 | 2.1 | 103747642 | 106744111 | tier1 | Out-of-frame | 19060 | NA | 0 |
| PRAD | TCGA-HI-7168-01A | TCGA-HI-7168 | UBE2R2|ITLN1 | UBE2R2 | ITLN1 | 9 | 1 | 1 | -1 | 22 | 13 | 13 | 2.1 | 33900269 | 160846606 | tier1 | Out-of-frame | 19096 | NA | 0 |
| PRAD | TCGA-YL-A8S9-01A | TCGA-YL-A8S9 | UCK2|CD37 | UCK2 | CD37 | 1 | 19 | 1 | 1 | 2 | 1 | 1 | 0.022 | 165797169 | 49838971 | tier3 | In-frame | 19178 | NA | 0 |
| PRAD | TCGA-J9-A52D-01A | TCGA-J9-A52D | UGGT2|TRPC4 | UGGT2 | TRPC4 | 13 | 13 | -1 | -1 | 22 | 19 | 5 | 0.7 | 96675294 | 38357497 | tier1 | CDS-5UTR | 19197 | NA | 0 |
| PRAD | TCGA-J9-A8CP-01A | TCGA-J9-A8CP | UNC5D|EIF4EBP1 | UNC5D | EIF4EBP1 | 8 | 8 | 1 | 1 | 2 | 2 | 2 | 1.1 | 35093405 | 37914599 | tier3 | In-frame | 19253 | NA | 0 |
| PRAD | TCGA-CH-5763-01A | TCGA-CH-5763 | UTRN|EIF4G3 | UTRN | EIF4G3 | 6 | 1 | 1 | -1 | 3 | 4 | 4 | 0.78 | 145110415 | 21139732 | tier1 | Out-of-frame | 19456 | NA | 0 |
| PRAD | TCGA-HC-7232-01A | TCGA-HC-7232 | UTRN|MMADHC | UTRN | MMADHC | 6 | 2 | 1 | -1 | 23 | 36 | 32 | 0.76 | 144844324 | 150443663 | tier1 | CDS-5UTR | 19462 | NA | 0 |
| PRAD | TCGA-CH-5741-01A | TCGA-CH-5741 | UTRN|PLAGL1 | UTRN | PLAGL1 | 6 | 6 | 1 | -1 | 10 | 5 | 4 | 0.23 | 144864006 | 144306311 | tier1 | CDS-5UTR | 19465 | NA | 0 |
| PRAD | TCGA-2A-AAYU-01A | TCGA-2A-AAYU | VDAC2|NEO1 | VDAC2 | NEO1 | 10 | 15 | 1 | 1 | 6 | 6 | 6 | 0.4 | 76970947 | 73408881 | tier1 | In-frame | 19541 | NA | 0 |
| PRAD | TCGA-KK-A5A1-01A | TCGA-KK-A5A1 | VPS13D|TNFRSF8 | VPS13D | TNFRSF8 | 1 | 1 | 1 | 1 | 6 | 2 | 2 | 0.18 | 12516186 | 12157158 | tier1 | In-frame | 19634 | NA | 0 |
| PRAD | TCGA-EJ-7783-01A | TCGA-EJ-7783 | VPS28|SF3A1 | VPS28 | SF3A1 | 8 | 22 | -1 | -1 | 2 | 9 | 9 | 0.053 | 145649000 | 30742508 | tier3 | 3UTR-CDS | 19641 | NA | 0 |
| PRAD | TCGA-KK-A7B1-01A | TCGA-KK-A7B1 | VSIG1|MID2 | VSIG1 | MID2 | X | X | 1 | 1 | 3 | 1 | 1 | 0.095 | 107288409 | 107169324 | tier3 | In-frame | 19686 | NA | 0 |
| PRAD | TCGA-2A-A8VT-01A | TCGA-2A-A8VT | WDR20|LRP10 | WDR20 | LRP10 | 14 | 14 | 1 | 1 | 31 | 25 | 23 | 0.062 | 102606509 | 23341947 | tier1 | Out-of-frame | 19763 | NA | 0 |
| PRAD | TCGA-HC-7230-01A | TCGA-HC-7230 | WDR52|SLC35A5 | WDR52 | SLC35A5 | 3 | 3 | -1 | 1 | 2 | 1 | 1 | 1.6 | 113135372 | 112299393 | tier2 | Out-of-frame | 19783 | NA | 0 |
| PRAD | TCGA-2A-A8W3-01A | TCGA-2A-A8W3 | WIPF2|RAMP2 | WIPF2 | RAMP2 | 17 | 17 | 1 | 1 | 20 | 3 | 3 | 0.72 | 38375744 | 40913852 | tier1 | 5UTR-CDS | 19871 | NA | 0 |
| PRAD | TCGA-J4-A83J-01A | TCGA-J4-A83J | WWC1|SNTG2 | WWC1 | SNTG2 | 5 | 2 | 1 | 1 | 31 | 26 | 23 | 0.14 | 167841595 | 1161234 | tier1 | Out-of-frame | 19925 | NA | 0 |
| PRAD | TCGA-HC-7211-01A | TCGA-HC-7211 | ZBTB20|CLDN11 | ZBTB20 | CLDN11 | 3 | 3 | -1 | 1 | 5 | 10 | 7 | 0.002 | 114069121 | 170140951 | tier1 | In-frame | 20081 | NA | 0 |
| PRAD | TCGA-EJ-8468-01A | TCGA-EJ-8468 | ZBTB20|LSAMP | ZBTB20 | LSAMP | 3 | 3 | -1 | -1 | 9 | 7 | 6 | 0.81 | 114412375 | 115571464 | tier1 | 5UTR-CDS | 20089 | NA | 0 |
| PRAD | TCGA-EJ-A46G-01A | TCGA-EJ-A46G | ZBTB20|LSAMP | ZBTB20 | LSAMP | 3 | 3 | -1 | -1 | 16 | 10 | 10 | 0.81 | 114519948 | 116728221 | tier1 | NA | 20090 | NA | 0 |
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