Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-KC-A4BR-01A | TCGA-KC-A4BR | TMPRSS2|GUCA2A | TMPRSS2 | GUCA2A | 21 | 1 | -1 | -1 | 76 | 40 | 35 | 0.22 | 42880008 | 42629281 | tier1 | 5UTR-CDS | 18276 | NA | 0 |
| PRAD | TCGA-V1-A8WS-01A | TCGA-V1-A8WS | TMPRSS2|INPP4B | TMPRSS2 | INPP4B | 21 | 4 | -1 | -1 | 33 | 14 | 14 | 1 | 42879877 | 143191927 | tier1 | 5UTR-CDS | 18278 | NA | 0 |
| PRAD | TCGA-ZG-A9L1-01A | TCGA-ZG-A9L1 | TMPRSS2|MLLT3 | TMPRSS2 | MLLT3 | 21 | 9 | -1 | -1 | 76 | 72 | 67 | 0.78 | 42851099 | 20620833 | tier1 | Out-of-frame | 18279 | NA | 0 |
| PRAD | TCGA-CH-5762-01A | TCGA-CH-5762 | TMPRSS2|MORC3 | TMPRSS2 | MORC3 | 21 | 21 | -1 | 1 | 14 | 29 | 26 | 1.7 | 42870046 | 37705944 | tier1 | In-frame | 18280 | NA | 0 |
| PRAD | TCGA-EJ-8469-01A | TCGA-EJ-8469 | TMPRSS2|MRPS6 | TMPRSS2 | MRPS6 | 21 | 21 | -1 | 1 | 469 | 286 | 260 | 0.11 | 42845252 | 35497641 | tier1 | Out-of-frame | 18281 | NA | 0 |
| PRAD | TCGA-ZG-A9L2-01A | TCGA-ZG-A9L2 | TMPRSS2|PDE9A | TMPRSS2 | PDE9A | 21 | 21 | -1 | 1 | 40 | 39 | 35 | 0.83 | 42866283 | 44163886 | tier1 | In-frame | 18282 | NA | 0 |
| PRAD | TCGA-EJ-8474-01A | TCGA-EJ-8474 | TMPRSS2|SARS | TMPRSS2 | SARS | 21 | 1 | -1 | 1 | 171 | 150 | 131 | 0.22 | 42860321 | 109766600 | tier1 | In-frame | 18284 | NA | 0 |
| PRAD | TCGA-KK-A59Y-01A | TCGA-KK-A59Y | TMPRSS2|TMEFF2 | TMPRSS2 | TMEFF2 | 21 | 2 | -1 | -1 | 48 | 29 | 29 | 4.7 | 42852403 | 192863934 | tier1 | In-frame | 18286 | NA | 0 |
| PRAD | TCGA-G9-7521-01A | TCGA-G9-7521 | TMSB10|CD63 | TMSB10 | CD63 | 2 | 12 | 1 | -1 | 2 | 8 | 1 | 100 | 85133795 | 56123444 | tier3 | NA | 18291 | NA | 0 |
| PRAD | TCGA-KK-A59V-01A | TCGA-KK-A59V | TOX3|CNTN5 | TOX3 | CNTN5 | 16 | 11 | -1 | 1 | 7 | 6 | 6 | 0.016 | 52580549 | 100061858 | tier1 | Out-of-frame | 18461 | NA | 0 |
| PRAD | TCGA-KK-A8I4-01A | TCGA-KK-A8I4 | TRAF3IP2|KIAA1324 | TRAF3IP2 | KIAA1324 | 6 | 1 | -1 | 1 | 5 | 5 | 5 | 0.18 | 111896846 | 109727667 | tier1 | In-frame | 18555 | NA | 0 |
| PRAD | TCGA-VP-A875-01A | TCGA-VP-A875 | TROVE2|CACNA1S | TROVE2 | CACNA1S | 1 | 1 | 1 | -1 | 35 | 41 | 37 | 2.4 | 193028906 | 201039532 | tier1 | 5UTR-CDS | 18716 | NA | 0 |
| PRAD | TCGA-KK-A8I5-01A | TCGA-KK-A8I5 | TRPM4|PPFIA3 | TRPM4 | PPFIA3 | 19 | 19 | 1 | 1 | 19 | 32 | 29 | 0.056 | 49675365 | 49636258 | tier1 | Out-of-frame | 18729 | NA | 0 |
| PRAD | TCGA-G9-6371-01A | TCGA-G9-6371 | TRPM8|RABEP1 | TRPM8 | RABEP1 | 2 | 17 | 1 | 1 | 2 | 49 | 31 | 1.1 | 234928166 | 5283828 | tier4 | NA | 18736 | NA | 0 |
| PRAD | TCGA-KK-A7AZ-01A | TCGA-KK-A7AZ | TRPM8|SLC4A4 | TRPM8 | SLC4A4 | 2 | 4 | 1 | 1 | 17 | 14 | 11 | 0.036 | 234905160 | 72306333 | tier1 | Out-of-frame | 18737 | NA | 0 |
| PRAD | TCGA-HC-7738-01A | TCGA-HC-7738 | TSPAN1|TFF3 | TSPAN1 | TFF3 | 1 | 21 | 1 | -1 | 3 | 21 | 7 | 0.77 | 46651630 | 43735706 | tier1 | 3UTR-5UTR | 18783 | NA | 0 |
| PRAD | TCGA-G9-6371-01A | TCGA-G9-6371 | TSPAN1|USP20 | TSPAN1 | USP20 | 1 | 9 | 1 | 1 | 2 | 2 | 2 | 3.1 | 46651630 | 132620746 | tier3 | 3UTR-CDS | 18784 | NA | 0 |
| PRAD | TCGA-HC-7744-01A | TCGA-HC-7744 | TTC21B|SLC38A11 | TTC21B | SLC38A11 | 2 | 2 | -1 | -1 | 50 | 16 | 14 | 0.017 | 166810195 | 165802237 | tier1 | Out-of-frame | 18833 | validated | 0 |
| PRAD | TCGA-V1-A9ZI-01A | TCGA-V1-A9ZI | TUBB3|TRPM5 | TUBB3 | TRPM5 | 16 | 11 | 1 | -1 | 10 | 3 | 3 | 0.28 | 89989866 | 2439821 | tier1 | Out-of-frame | 18929 | NA | 0 |
| PRAD | TCGA-HC-7210-01A | TCGA-HC-7210 | TUSC3|LOXL2 | TUSC3 | LOXL2 | 8 | 8 | 1 | -1 | 18 | 13 | 12 | 1.6 | 15601121 | 23225947 | tier1 | CDS-5UTR | 18969 | NA | 0 |
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