Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
| Showing page 232 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-EJ-A46D-01A | TCGA-EJ-A46D | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 15 | 12 | 12 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18136 | NA | 0 |
| PRAD | TCGA-EJ-A46F-01A | TCGA-EJ-A46F | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 9 | 17 | 16 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18137 | NA | 0 |
| PRAD | TCGA-EJ-A65D-01A | TCGA-EJ-A65D | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 11 | 7 | 7 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18138 | NA | 0 |
| PRAD | TCGA-EJ-A65F-01A | TCGA-EJ-A65F | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 21 | 17 | 15 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18139 | NA | 0 |
| PRAD | TCGA-EJ-A7NF-01A | TCGA-EJ-A7NF | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 9 | 13 | 12 | 2 | 42880008 | 39817544 | tier4 | 5UTR-CDS | 18140 | NA | 0 |
| PRAD | TCGA-EJ-A8FO-01A | TCGA-EJ-A8FO | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 87 | 62 | 61 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18141 | NA | 0 |
| PRAD | TCGA-FC-7708-01A | TCGA-FC-7708 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 32 | 55 | 48 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18142 | NA | 0 |
| PRAD | TCGA-G9-6329-01A | TCGA-G9-6329 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 384 | 334 | 292 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18143 | NA | 0 |
| PRAD | TCGA-G9-6332-01A | TCGA-G9-6332 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 153 | 124 | 116 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18144 | NA | 0 |
| PRAD | TCGA-G9-6342-01A | TCGA-G9-6342 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 70 | 22 | 21 | 2 | 42880008 | 39795483 | tier1 | 5UTR-CDS | 18145 | NA | 0 |
| PRAD | TCGA-G9-6351-01A | TCGA-G9-6351 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 10 | 4 | 4 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18146 | NA | 0 |
| PRAD | TCGA-G9-6353-01A | TCGA-G9-6353 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 10 | 10 | 7 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18147 | NA | 0 |
| PRAD | TCGA-G9-6354-01A | TCGA-G9-6354 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 25 | 28 | 24 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18148 | NA | 0 |
| PRAD | TCGA-G9-6356-01A | TCGA-G9-6356 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 4 | 1 | 1 | 2 | 42880008 | 39817544 | tier4 | 5UTR-CDS | 18149 | NA | 0 |
| PRAD | TCGA-G9-6361-01A | TCGA-G9-6361 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 12 | 13 | 13 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18150 | NA | 0 |
| PRAD | TCGA-G9-6362-01A | TCGA-G9-6362 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 4 | 5 | 5 | 2 | 42880008 | 39817544 | tier2 | 5UTR-CDS | 18151 | NA | 0 |
| PRAD | TCGA-G9-6363-01A | TCGA-G9-6363 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 4 | 5 | 4 | 2 | 42879877 | 39817544 | tier1 | 5UTR-CDS | 18152 | NA | 0 |
| PRAD | TCGA-G9-6364-01A | TCGA-G9-6364 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 4 | 1 | 1 | 2 | 42880008 | 39817544 | tier2 | 5UTR-CDS | 18153 | NA | 0 |
| PRAD | TCGA-G9-6365-01A | TCGA-G9-6365 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 16 | 16 | 16 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18154 | validated | 0 |
| PRAD | TCGA-G9-6373-01A | TCGA-G9-6373 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 5 | 3 | 2 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18155 | NA | 0 |
|
Showing page 232 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.