Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
| Showing page 231 |
first page | previous page | next page | last page |
| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-EJ-5521-01A | TCGA-EJ-5521 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 103 | 73 | 65 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18116 | NA | 0 |
| PRAD | TCGA-EJ-5522-01A | TCGA-EJ-5522 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 24 | 22 | 20 | 2 | 42880008 | 39956869 | tier1 | 5UTR-5UTR | 18117 | NA | 0 |
| PRAD | TCGA-EJ-5524-01A | TCGA-EJ-5524 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 34 | 15 | 14 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18118 | NA | 0 |
| PRAD | TCGA-EJ-5525-01A | TCGA-EJ-5525 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 49 | 42 | 42 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18119 | NA | 0 |
| PRAD | TCGA-EJ-5526-01A | TCGA-EJ-5526 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 144 | 70 | 65 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18120 | NA | 0 |
| PRAD | TCGA-EJ-5527-01A | TCGA-EJ-5527 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 10 | 21 | 20 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18121 | NA | 0 |
| PRAD | TCGA-EJ-5530-01A | TCGA-EJ-5530 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 172 | 111 | 103 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18122 | NA | 0 |
| PRAD | TCGA-EJ-5542-01A | TCGA-EJ-5542 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 8 | 13 | 12 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18123 | NA | 0 |
| PRAD | TCGA-EJ-7315-01A | TCGA-EJ-7315 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 48 | 47 | 44 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18124 | NA | 0 |
| PRAD | TCGA-EJ-7321-01A | TCGA-EJ-7321 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 29 | 40 | 40 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18125 | NA | 0 |
| PRAD | TCGA-EJ-7325-01B | TCGA-EJ-7325 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 28 | 22 | 21 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18126 | NA | 0 |
| PRAD | TCGA-EJ-7327-01A | TCGA-EJ-7327 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 148 | 115 | 92 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18127 | NA | 0 |
| PRAD | TCGA-EJ-7328-01A | TCGA-EJ-7328 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 13 | 7 | 7 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18128 | NA | 0 |
| PRAD | TCGA-EJ-7783-01A | TCGA-EJ-7783 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 30 | 14 | 11 | 2 | 42879877 | 39817544 | tier1 | 5UTR-CDS | 18129 | NA | 0 |
| PRAD | TCGA-EJ-7784-01A | TCGA-EJ-7784 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 65 | 65 | 57 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18130 | NA | 0 |
| PRAD | TCGA-EJ-7785-01A | TCGA-EJ-7785 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 47 | 24 | 14 | 2 | 42878372 | 39795483 | tier2 | NA | 18131 | NA | 0 |
| PRAD | TCGA-EJ-7793-01A | TCGA-EJ-7793 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 43 | 51 | 50 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18132 | NA | 0 |
| PRAD | TCGA-EJ-7797-01A | TCGA-EJ-7797 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 37 | 25 | 25 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18133 | NA | 0 |
| PRAD | TCGA-EJ-8469-01A | TCGA-EJ-8469 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 55 | 52 | 49 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18134 | NA | 0 |
| PRAD | TCGA-EJ-8472-01A | TCGA-EJ-8472 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 32 | 12 | 11 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18135 | NA | 0 |
|
Showing page 231 |
first page | previous page | next page | last page |
Copyright © 2020 University of Pennsylvania. All Rights Reserved.