Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-CH-5752-01A | TCGA-CH-5752 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 70 | 76 | 68 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18096 | NA | 0 |
| PRAD | TCGA-CH-5764-01A | TCGA-CH-5764 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 9 | 5 | 4 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18097 | NA | 0 |
| PRAD | TCGA-CH-5765-01A | TCGA-CH-5765 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 13 | 31 | 27 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18098 | NA | 0 |
| PRAD | TCGA-CH-5768-01A | TCGA-CH-5768 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 18 | 11 | 10 | 2 | 42880008 | 39956869 | tier1 | 5UTR-5UTR | 18099 | NA | 0 |
| PRAD | TCGA-CH-5769-01A | TCGA-CH-5769 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 43 | 32 | 28 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18100 | NA | 0 |
| PRAD | TCGA-CH-5789-01A | TCGA-CH-5789 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 59 | 29 | 29 | 2 | 42866283 | 39817544 | tier1 | Out-of-frame | 18101 | NA | 0 |
| PRAD | TCGA-CH-5790-01A | TCGA-CH-5790 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 31 | 19 | 17 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18102 | NA | 0 |
| PRAD | TCGA-CH-5791-01A | TCGA-CH-5791 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 16 | 17 | 16 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18103 | NA | 0 |
| PRAD | TCGA-CH-5794-01A | TCGA-CH-5794 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 47 | 25 | 24 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18104 | NA | 0 |
| PRAD | TCGA-EJ-5495-01A | TCGA-EJ-5495 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 21 | 9 | 9 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18105 | NA | 0 |
| PRAD | TCGA-EJ-5496-01A | TCGA-EJ-5496 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 21 | 22 | 18 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18106 | NA | 0 |
| PRAD | TCGA-EJ-5497-01A | TCGA-EJ-5497 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 47 | 42 | 41 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18107 | NA | 0 |
| PRAD | TCGA-EJ-5498-01A | TCGA-EJ-5498 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 8 | 4 | 2 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18108 | NA | 0 |
| PRAD | TCGA-EJ-5499-01A | TCGA-EJ-5499 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 61 | 72 | 71 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18109 | NA | 0 |
| PRAD | TCGA-EJ-5502-01A | TCGA-EJ-5502 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 231 | 144 | 128 | 2 | 42860321 | 39817544 | tier2 | Out-of-frame | 18110 | NA | 0 |
| PRAD | TCGA-EJ-5506-01A | TCGA-EJ-5506 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 7 | 11 | 10 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18111 | NA | 0 |
| PRAD | TCGA-EJ-5507-01A | TCGA-EJ-5507 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 18 | 13 | 10 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18112 | NA | 0 |
| PRAD | TCGA-EJ-5508-01A | TCGA-EJ-5508 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 9 | 4 | 4 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18113 | NA | 0 |
| PRAD | TCGA-EJ-5512-01A | TCGA-EJ-5512 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 7 | 5 | 5 | 2 | 42878372 | 39817544 | tier1 | NA | 18114 | NA | 0 |
| PRAD | TCGA-EJ-5516-01A | TCGA-EJ-5516 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 20 | 19 | 16 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18115 | NA | 0 |
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