Transcript Fusion
The transcript fusion data of TCGA were retrieved from the TumorFusions database.
List of the transcript fusions of the GESPs in each cancer type
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| Cancer Type | TCGA_barcode | Patient | Fusion_transcript | Gene_A | Gene_B | Chr_A | Chr_B | Strand_A | Strand_B | #_Discordant_Pairs | #_JSR | #_perfect_JSR | Evalue | Junction_A | Junction_B | Tier | Frame | TN | WGS_validation | Centrality |
| PRAD | TCGA-HC-8216-01A | TCGA-HC-8216 | TMEM104|AC011497.1 | TMEM104 | AC011497.1 | 17 | 19 | 1 | 1 | 4 | 4 | 4 | 0.072 | 72773514 | 42989248 | tier1 | CDS-3UTR | 17921 | NA | 0 |
| PRAD | TCGA-EJ-7318-01B | TCGA-EJ-7318 | TMEM104|LIN52 | TMEM104 | LIN52 | 17 | 14 | 1 | 1 | 13 | 15 | 14 | 0.47 | 72773514 | 74557935 | tier1 | Out-of-frame | 17923 | NA | 0 |
| PRAD | TCGA-EJ-7115-01A | TCGA-EJ-7115 | TMEM135|GRM5 | TMEM135 | GRM5 | 11 | 11 | 1 | -1 | 2 | 1 | 1 | 1.1 | 87006865 | 88242672 | tier3 | In-frame | 17975 | NA | 0 |
| PRAD | TCGA-XJ-A83G-01A | TCGA-XJ-A83G | TMEM182|ARHGAP15 | TMEM182 | ARHGAP15 | 2 | 2 | 1 | 1 | 2 | 1 | 1 | 0.38 | 103353472 | 144460988 | tier3 | 5UTR-CDS | 17996 | NA | 0 |
| PRAD | TCGA-EJ-5505-01A | TCGA-EJ-5505 | TMEM39A|EPHA6 | TMEM39A | EPHA6 | 3 | 3 | -1 | 1 | 12 | 24 | 23 | 0.62 | 119171294 | 96706174 | tier1 | In-frame | 18023 | NA | 0 |
| PRAD | TCGA-XQ-A8TA-01A | TCGA-XQ-A8TA | TMEM8A|CSDA | TMEM8A | CSDA | 16 | 12 | -1 | -1 | 12 | 8 | 6 | 0.24 | 431701 | 10856747 | tier1 | Out-of-frame | 18063 | NA | 0 |
| PRAD | TCGA-HC-7742-01A | TCGA-HC-7742 | TMEM97|BLMH | TMEM97 | BLMH | 17 | 17 | 1 | -1 | 19 | 19 | 15 | 0.76 | 26646391 | 28601215 | tier1 | In-frame | 18067 | NA | 0 |
| PRAD | TCGA-G9-6371-01A | TCGA-G9-6371 | TMPRSS2|ARFGEF2 | TMPRSS2 | ARFGEF2 | 21 | 20 | -1 | 1 | 2 | 10 | 7 | 1 | 42837936 | 47615777 | tier2 | 3UTR-CDS | 18083 | NA | 0 |
| PRAD | TCGA-EJ-7784-01A | TCGA-EJ-7784 | TMPRSS2|ATF7IP | TMPRSS2 | ATF7IP | 21 | 12 | -1 | 1 | 361 | 513 | 469 | 2 | 42870046 | 14613429 | tier1 | Out-of-frame | 18084 | NA | 0 |
| PRAD | TCGA-FC-A6HD-01A | TCGA-FC-A6HD | TMPRSS2|BRAF | TMPRSS2 | BRAF | 21 | 7 | -1 | -1 | 63 | 73 | 61 | 1 | 42866283 | 140481493 | tier1 | Out-of-frame | 18085 | NA | 0 |
| PRAD | TCGA-2A-A8VL-01A | TCGA-2A-A8VL | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 29 | 18 | 14 | 2 | 42866283 | 39817544 | tier1 | Out-of-frame | 18086 | NA | 0 |
| PRAD | TCGA-2A-A8VT-01A | TCGA-2A-A8VT | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 82 | 38 | 37 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18087 | NA | 0 |
| PRAD | TCGA-2A-A8VV-01A | TCGA-2A-A8VV | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 47 | 48 | 45 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18088 | NA | 0 |
| PRAD | TCGA-2A-AAYU-01A | TCGA-2A-AAYU | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 644 | 268 | 237 | 2 | 42866283 | 39817544 | tier1 | Out-of-frame | 18089 | NA | 0 |
| PRAD | TCGA-4L-AA1F-01A | TCGA-4L-AA1F | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 50 | 51 | 47 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18090 | NA | 0 |
| PRAD | TCGA-CH-5739-01A | TCGA-CH-5739 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 30 | 17 | 16 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18091 | NA | 0 |
| PRAD | TCGA-CH-5740-01A | TCGA-CH-5740 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 45 | 47 | 42 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18092 | NA | 0 |
| PRAD | TCGA-CH-5741-01A | TCGA-CH-5741 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 159 | 171 | 169 | 2 | 42870046 | 39817544 | tier1 | In-frame | 18093 | NA | 0 |
| PRAD | TCGA-CH-5743-01A | TCGA-CH-5743 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 3 | 1 | 1 | 2 | 42870046 | 39817544 | tier3 | In-frame | 18094 | NA | 0 |
| PRAD | TCGA-CH-5746-01A | TCGA-CH-5746 | TMPRSS2|ERG | TMPRSS2 | ERG | 21 | 21 | -1 | -1 | 15 | 10 | 7 | 2 | 42880008 | 39817544 | tier1 | 5UTR-CDS | 18095 | NA | 0 |
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